Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03488 ATGTCCACAACCAAATCTAAACCCATATTCTTGTTCTTCACAACCCCAACTTGTGCCATGGCCTCCCTCATTTCCCTTCTCTCCCTCTCCCTCCTACTCTTCTTCACCCTCTCCTCCGCCACGCGCCACCACCACAACAACAACAACCACAATTCCCACACTCCCTCCACCCCCACACCCACCCCCATTGCCGCCGTCTCACCCGCAATCCAACAAGCCTGCAAGGGCACGCGATTTCCCCCGCAATGCGAGTCCACTCTCTCCCAATCCACCACTCTCCCGCCCAACCCAACCTCACTCCAGCTCCTCCAATCTGCCATCTCCGCCTCCTCCAACAACCTTAAAACCGCCCAGTCCATGGTCAAGTCCATCCTCGACACCTCTTCCGACAGCCGCAACCGCACCGTCGCCGCCACCACATGCCTCGAGGAACTCGCCAACTCCGACCACCGCCTATCCCAAGCCGACGATGCCCTGACACGTGACAAGACCAAGGACGCCCGCGCCTGGCTTACCGCCGCCCTTGTCTACCAGTACGACTGCTGGAATGGCCTCAAGTACGCCAACGACACATCCAAGGTCGGCGAAACGATGTCGTTTATCGACAACCTCACCCAACTCTCAAGCAACGCGCTCTCCATGGCCTTCTCCTACGACGCCTACGGGAAAGACCTGGCGACGTGGAAACCTCCGGCGACAGAGCGCGACGGGTTCTGGGAAGCCACAGGATCTTCGGGCGGAGGTTCCGTACCAGGGTTCCCGACGGGCCTGAAGCCGGACGCTACGGTGTGCAAGGATGGCAGCAATGGGTGTTACAAGACGGTACAGGAAGCGGTTAACGCGGCGCCGAGTAACGGTAACGGCGGAAAGAGGTTCGTGATATACATTAAGGAAGGGGTATATGAAGAGACCGTTAGAGTTCCGTTAGAGAAGACGAATTTGGTGTTCTTGGGCGACGGCATGGGGAAAACGGTAATTACTGGCTCTGCTAACGCTGGCCAGCCCGGCATGACCACTTACAACTCTGCTACAGTCGCGGTTCTTGGGGATGGGTTCATGGCGAAGGATCTCACAATACAGAACACTGCTGGGCCTGATGCTCACCAAGCAGTGGCCTTCAGACTAGACAGCGATCTCTCAATCATTGAGAACTGTGAATTCATAGGCAACCAAGACACACTCTATGCTCATTCCCTGCGCCAGTTCTACAAATCGTGCCGGATTATCGGCAACGTAGATTTCATCTTCGGCAACTCGGCCGCCATCTTCCAAGACAGCCAAGTCTTGGTGGCTCCAAGGCAAGTGAAGCCGGAGAAGGGGGAGAACAACGCTGTGACGGCGCACGGCAGGACAGATCCTGCACAGTCAACGGGGTTTGTGTTCCAGAACTGCCTGATCAATGGCACCGAGGAATACATGAAGTTGTATCATAGCAATCCCAAAGTGCATAAGAACTACTTGGGTAGGCCTTGGAAAGAGTACTCTAGAACAGTTTTCCTGAATTGCTTCTTGGAAGCATTGATCACACCCCAGGGTTGGATGCCATGGACTGGTGACTTTGCTCTCAAGACACTCTACTATGGAGAATTTGAGAATAAGGGACCTGGTTCTGATTTGTCTCAGAGGGTATCCTGGAGTAGCAAGGTCCCCTCGGAGCATGTTTTTGCTTATTCAGTGCAGAATTTCATCCAAGGAGATGAGTATATTCAATAA 1713 0.5441 MSTTKSKPIFLFFTTPTCAMASLISLLSLSLLLFFTLSSATRHHHNNNNHNSHTPSTPTPTPIAAVSPAIQQACKGTRFPPQCESTLSQSTTLPPNPTSLQLLQSAISASSNNLKTAQSMVKSILDTSSDSRNRTVAATTCLEELANSDHRLSQADDALTRDKTKDARAWLTAALVYQYDCWNGLKYANDTSKVGETMSFIDNLTQLSSNALSMAFSYDAYGKDLATWKPPATERDGFWEATGSSGGGSVPGFPTGLKPDATVCKDGSNGCYKTVQEAVNAAPSNGNGGKRFVIYIKEGVYEETVRVPLEKTNLVFLGDGMGKTVITGSANAGQPGMTTYNSATVAVLGDGFMAKDLTIQNTAGPDAHQAVAFRLDSDLSIIENCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSAAIFQDSQVLVAPRQVKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMKLYHSNPKVHKNYLGRPWKEYSRTVFLNCFLEALITPQGWMPWTGDFALKTLYYGEFENKGPGSDLSQRVSWSSKVPSEHVFAYSVQNFIQGDEYIQ 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03488 570 SMART PMEI_2 65 214 IPR006501 GO:0004857
Aip03g03488 570 Gene3D - 257 570 IPR012334 -
Aip03g03488 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 213 IPR006501 GO:0004857
Aip03g03488 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 217 IPR035513 -
Aip03g03488 570 SUPERFAMILY Pectin lyase-like 256 569 IPR011050 -
Aip03g03488 570 PANTHER PECTINESTERASE 16 569 - -
Aip03g03488 570 CDD PMEI-like_3 73 214 - -
Aip03g03488 570 Pfam Pectinesterase 260 566 IPR000070 GO:0030599|GO:0042545
Aip03g03488 570 PANTHER PECTINESTERASE 16 569 - -
Aip03g03488 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 214 IPR035513 -
Aip03g03488 570 Pfam Plant invertase/pectin methylesterase inhibitor 69 214 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03488 Aip-Chr3 113987689 113990655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03488 62 568 Carbohydrate Esterase AT5G09760 69.141 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03488 - - adu:107480269 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03488 03 113987689 113990655 Aip03g03488 03 113987689 113990655 ECH
Aip03g03488 03 113987689 113990655 Aip10g02335 10 105827798 105830515 PCT