Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03485 ATGATGGATACCACAAACCTGCAGCAGAATAATAATGCTACTGTCTTCACTGCTGCTACTTGGACAGAAGTTGATCATAATCACATCATTCACCAAATCCCTAACATCATGGCTTCTGGGGTTTTCCCAAACTACCATCACCTTCTTCAAATTCATCATCATCCATCAACAACCACTACTGCACTGCCCTCTTCTTCTTCATCGGGGTTCCTTGGTGACATACTTGGAGTAGTGCACCTAGAACACCAAGAGCAAGAACAAGATCATGATCACGATCATGAAGATGAAGAGGCAGAAGAGGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCCGTGGACATCGATCCCGCCACCATTAGGAAGCCAAAGAGGCGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCGGCGCGCCACCGCAGGGAGAGGATCAGCGAGAAGATTCGGATCCTGCAGAGGCTTGTTCCCGGTGGAACAAAGATGGACACAGCTTCCATGCTGGATGAAGCAATTCGATATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCCACTACTCCTCATCAACCGCCACAATGCAATTATGTTGGTCTTCCTAATAATTCTAACAGTGCCTTCTCTTTAGGCCCTTCTACTTCTGATTGGCCTTTTGCACCCACCACCACGCCCTCCGCCGTGCCTGCCTCATTCGGATTCAATGCCGGAGGAGGTCATCATGCCCCCTCCAGCTTTAATCATCATGAGGTAATTAATGAATGA 786 0.4835 MMDTTNLQQNNNATVFTAATWTEVDHNHIIHQIPNIMASGVFPNYHHLLQIHHHPSTTTTALPSSSSSGFLGDILGVVHLEHQEQEQDHDHDHEDEEAEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTTPHQPPQCNYVGLPNNSNSAFSLGPSTSDWPFAPTTTPSAVPASFGFNAGGGHHAPSSFNHHEVINE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03485 261 Pfam Helix-loop-helix DNA-binding domain 145 184 IPR011598 GO:0046983
Aip03g03485 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Aip03g03485 261 Gene3D - 138 200 IPR036638 GO:0046983
Aip03g03485 261 SMART finulus 141 190 IPR011598 GO:0046983
Aip03g03485 261 CDD bHLH_AtIND_like 136 193 - -
Aip03g03485 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 243 IPR045843 GO:0003700|GO:0006355
Aip03g03485 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 243 - -
Aip03g03485 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03485 Aip-Chr3 113766086 113766871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03485 102 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.899 1.71e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g03485 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03485 - - aprc:113856609 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03485 03 113766086 113766871 Aip03g03485 03 113766086 113766871 ECH
Aip03g03485 03 113766086 113766871 Aip10g02337 10 105943154 105943912 PCT