Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03453 ATGACCATTCCACACGTATTCAGATGCCCTATCAGTTTGGACTTGTTTGAAGATCCAGTGACTCTATGCACTGGTCAAACCTATGACAGATCAAGCATAGAGAAATGGTTAGGTACAGGTAACCTGATATGCCCTGTCACAATGCAGAAGCTCCATGACCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCCACCAGTGGCTTCAACTTGGTCCTCCATTTCACCCTGGTAACTCTGCAACTATTGATTCTCTAGCTGCTTTGAAACACACCCTTCAATCTCAAGAGGATGATACCTTAGAGAACAAGCTCCAAGTACTTGAGAAAATCAATGTCTTCTTTTCTGGTGAGTATAGTTCTTTCAGCAGATCATGTTTCGTACAACTTGGTTTTTTGCCTCTGCTCTTGGAACTAGTTTTTAGAGGAGGAACAATAGAAGAATCTCATGCTGTATCAAATAATGATCGCATGAAATTTATAGAGATTGCACTTGGTTGCATTGTGAAACTGCTGCATCTTGGTTATGATTTGGAGGCTCTAAATATTATCAAAGATGATGAGTCTAAATTAGCAACATTTGTGGTGTTATTTGAAAAAGGCACAATTTCTGTTAAATCTAGCTTATGTCATATTATAGAGTCAGCATCATCATCTGAGACAACACAAGAGTTATGTTATGTTTTTGGAAACACTCAGAAACTAATGCATGAGATTGTTTTAGTACTTGTTCAAAATTGTGATGCTTCTGAGGATGCAGTTAAGGCCATTTTAGCACTGTGTTCATTGAATTCCAACAGAGAGAGTTTGGTGAGAGAAGGAGCAATAGAAGGGATCATAACATACATTTCAATGATTTCATCATCATCAGGTAATGAGATTACTCAAATTAGAGGACAAAACAAGAAACTTCTGACTTCAATAGCAATGGGAATAGCAGTAAAACTACTGGAGCTAGAGAGTGGTAGAGAGACATTGGTGAGTCACCCAAACGGGGTTGATACTTTGGTGAAGTTGGTGTTCAGTGTAAAATGTGATCAAGATTGCAGTGATAGTGCTGTTGAGGCACTTTCCATTGTTTGTGGTGATTATATAAGTGCAAGAGAACAAGCCATTGGTGCTGGGGTTATGACAAAGTTGCTGTTGCTTATGCAGAGTCATTGTGCCACCACTACTAAATCAAAGACCAGAATGCTCCTCAAATTGCTCAAATCCAAGTGGGTTCAGGTGCCAAAGTAG 1242 0.3961 MTIPHVFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLGTGNLICPVTMQKLHDPSIVPNHTLRHLIHQWLQLGPPFHPGNSATIDSLAALKHTLQSQEDDTLENKLQVLEKINVFFSGEYSSFSRSCFVQLGFLPLLLELVFRGGTIEESHAVSNNDRMKFIEIALGCIVKLLHLGYDLEALNIIKDDESKLATFVVLFEKGTISVKSSLCHIIESASSSETTQELCYVFGNTQKLMHEIVLVLVQNCDASEDAVKAILALCSLNSNRESLVREGAIEGIITYISMISSSSGNEITQIRGQNKKLLTSIAMGIAVKLLELESGRETLVSHPNGVDTLVKLVFSVKCDQDCSDSAVEALSIVCGDYISAREQAIGAGVMTKLLLLMQSHCATTTKSKTRMLLKLLKSKWVQVPK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03453 413 CDD RING-Ubox_PUB 7 49 IPR045210 -
Aip03g03453 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
Aip03g03453 413 Gene3D - 85 409 IPR011989 -
Aip03g03453 413 PANTHER OS02G0542800 PROTEIN 1 407 - -
Aip03g03453 413 Pfam U-box domain 3 71 IPR003613 GO:0004842|GO:0016567
Aip03g03453 413 SUPERFAMILY RING/U-box 2 71 - -
Aip03g03453 413 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Aip03g03453 413 SUPERFAMILY ARM repeat 90 391 IPR016024 -
Aip03g03453 413 PANTHER WDSAM1 PROTEIN 1 407 IPR045185 GO:0061630
Aip03g03453 413 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03453 Aip-Chr3 112964656 112965897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03453 1 408 U-box Gene Family AT3G19380 28.199 7.89e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03453 - - adu:107479288 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03453 03 112964656 112965897 Aip03g03453 03 112964656 112965897 ECH