Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03438 atgaagaaggataagtattttgagaggtctgctgttgggtattctgtggtccttggggttgcctcaggtgagTCCGGTCTGCAGAGTAACCTAGCCGCCGCTTCACTTCCTGCTCTCCGGTCCAACGCTGCCCAGACTCTAGCCGCTGCCGCCCAGCCTTTAGCCAACGCCGCCCAGCCTCTCCACAAACATCCAATCGCATCGCACCAGCTCTGGACAATCTTCTTCGCGCTGCCCACCCGCCGTCATGCAGCCTTCAACCGACGTTGTCCAACCTCTCCGCGAACATCCGATCGCCCGCACCACCCCGGACAGCCTCCTTCGCGCTGCCCACCCGCCGCCCGCCTTGCAACCTCCCCTGCAGCCCACTACGTTCACCATCCCAACGTCACCATCCGCGACAGATCCGATCAACATACAGGGACAGATGCCGCTGCATTTTCATATGTGCATCACCGCTCACATGCAACTAAATGGAGTCCGATTTGGTTGAACCGCTTTGTAATGTCCCATCTTCATGTAcGGCCTGACTTGGAGGAGAAACCCTCTTCCATCGAGGTCAAACTTCCGCGCTCTTCTCCGAAGGAAATTTCACAGGCTTCATTGGGGACAACGCGTAATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATCGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGAGAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGAAGGATCCGAGTAACGACCCGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGGATGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGGTTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAAACGAGAGAATATTTTGGAACTAATATAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGGGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGATTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGAATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAACAAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACAGTGGATGACACTTTTAAAGCACATATAGAATTCCTGAGAAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAGGAATCAAGGGACTAGTTATATCGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTTTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAATTGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGATCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG 3372 0.4389 MKKDKYFERSAVGYSVVLGVASGESGLQSNLAAASLPALRSNAAQTLAAAAQPLANAAQPLHKHPIASHQLWTIFFALPTRRHAAFNRRCPTSPRTSDRPHHPGQPPSRCPPAARLATSPAAHYVHHPNVTIRDRSDQHTGTDAAAFSYVHHRSHATKWSPIWLNRFVMSHLHVRPDLEEKPSSIEVKLPRSSPKEISQASLGTTRNDEKKTKLKLQGRRRLCKVATSDDRDKEAAVDESRFDELIELDSPLPAPKNVIQIDESVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQKDPSNDPSQGAKYAVGDAGIEYVEDDDSPAKDAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTNIKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGGYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDGQHTVDDTFKAHIEFLRSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRRNQGTSYIGTSVSSSSNDRMADGAEFAFKPKDLDRSKKGFSPSSDGKLTESEIKDRIKRISQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03438 1123 MobiDBLite consensus disorder prediction 188 211 - -
Aip03g03438 1123 Coils Coil 274 294 - -
Aip03g03438 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 650 IPR027417 -
Aip03g03438 1123 MobiDBLite consensus disorder prediction 322 336 - -
Aip03g03438 1123 Coils Coil 1083 1103 - -
Aip03g03438 1123 Gene3D - 672 970 IPR027417 -
Aip03g03438 1123 Gene3D - 398 671 IPR038718 -
Aip03g03438 1123 PANTHER SNF2/RAD54 FAMILY MEMBER 392 1005 - -
Aip03g03438 1123 MobiDBLite consensus disorder prediction 1008 1025 - -
Aip03g03438 1123 MobiDBLite consensus disorder prediction 994 1025 - -
Aip03g03438 1123 PANTHER OS04G0692700 PROTEIN 392 1005 - -
Aip03g03438 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 666 966 IPR027417 -
Aip03g03438 1123 Pfam Helicase conserved C-terminal domain 772 884 IPR001650 -
Aip03g03438 1123 Pfam SNF2-related domain 428 720 IPR000330 GO:0005524|GO:0140658
Aip03g03438 1123 SMART ultradead3 408 611 IPR014001 -
Aip03g03438 1123 MobiDBLite consensus disorder prediction 88 115 - -
Aip03g03438 1123 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 775 934 IPR001650 -
Aip03g03438 1123 SMART helicmild6 801 884 IPR001650 -
Aip03g03438 1123 CDD SF2_C_SNF 767 895 - -
Aip03g03438 1123 MobiDBLite consensus disorder prediction 353 377 - -
Aip03g03438 1123 MobiDBLite consensus disorder prediction 320 341 - -
Aip03g03438 1123 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 600 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03438 Aip-Chr3 112340358 112351094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03438 413 938 RAD5 or RAD16-like Gene Family AT1G02670 24.826 3.97e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip03g03438 SNF2_N 1.5e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03438 K20093 - gmx:100779283 1394.02