Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03386 ATGCCTCTTCTGAGGAGAAAGCCTTTTTCCTTGGCTGATCCACCTAAGGACTTGAAGCCAGACGAGCATGTTTATCAAATTCGATTTACAAAGGAAATATTTCGAGATTATAACGATTATTTGAACCGTATAAATCTATATCGCCAGAGGATTTGGATGTGTAAAGTAACTGGAAAAACCAACTTGACTTATGAAGAGGCTTTGGTGTCAGAAAAAAGTGCCTCTGAGAAAGTTCAACAGTTTCCAAAAGAATTAAGGGCTTCTGTGTTAAGGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTTGCTGATTTCATTGCTGAAAAATTGGAAGGACGTTTCTTTGTGGGTGCTGAACTGCATGGGAAGAAGGACAATGAATTATACCCCTGCAGAATATTAAAAGTCATCCCAAAAGGAGTTGAAAAATTTTATTATGAGGTAGCTTGGCTTGACAAAGACAAGAATATAGGTGAAAAAGCAGAAGTCAATGCAAAAGATTTGGTACTAAAGAAACCATTATTCAGCAGAAATATGTTGAAGTCTTTTATCCGGGAATCGACATATAGGAATGCTCCTTGGGTTTTACATGAAGAAGTGGCAAAAAATCATGGAATCTCAACTGACATACCCGAGGAGTTAAGAGGAAGAGTTTGCTTCAAAAATGGACTTCTAACCTGCTCCAAGAAAAGAAAAACTGAGGAATCACTGGATGAAACTGAAAACTGTAAAAGGAAGAAGTTGGATGGGGCAGAATTTGATGGTTCTACTGAAGAGCAGCAAGAAAATGGTCAGCACAAGGTTGAGCGAATCAAATATCCAATTGATGATTTGTTAGTGAAGCCTAGTCCACATGATCCTGTTTTGGCTAATCGCCCTTCTCCATCAAGAGACTTCAATGTCCCCATGAACTGTGTAGGAAATCTCTTAATGGTTTGGGATTTTTGTACCACTTTTGGGAAAGTGTTGCACTTGTTGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCACAAGGACAGCAACATTGTTCTCCTTGTGGAGTCACATGCAGCTCTTTTTCGGGTTCTTATACAAGATGATAGTGAATACACTGAAGCAGTGAAAAACCGAAGGACGAAGTCCAAGATTACAATGGTTAACTGGACAGAATATCTATGCCATTTTCTAGAAATGATCAATGTTCCTGAATTGCGGCAATGTGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATATCAATGCTAAATTAGAAATCCTATATGAATTGGTCAATCGAGTGATTGAAACGACAATTTTTAGAGAGAAGTTGGGTGAGATTATTGAACAGAGGCATGTGCTTGGGGTGTCTAGGAGGGAAGAAGTGCTGGAAGATGCTAGGAAGAGAAGAAAAGAAAAAGAGATGTTGAAAGCTGAGATAGAGAGCAATGAAGTTGTGAATGGACATCACCTGAACAGTGAAAACGTCTCATCAAACAGTGATGATGATATACAGAATGGGCACATCGGAAAGAAAAGAAATGGAGAGATAGAATCATCTAGCGAAGACAATACAATTGGAAGTTTGATCAAACACTCAAATCCTGCTCCAAAGAACATGCCTAAGTCCAAGAAGCCAAATTCAGAGCCGAAACAACCAACAGAAAATGGAAAAGAATTACCAAAGCAATTTAAGAGTGATAAGGATTCACCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTTGAACGTGAGATGGAGAAACGGCCTATTCGTAGAAGCCCATTAGGTAAGGACAGAAATTATAATAGGTATTGGTGGTTTCGCCGTGATGGAAGGATATTTGTTGAAAACTCTGATTCGAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTTATGGGTTCACTGAACTGCAAGGGTGAGCGCGAAAGGGCACTGCGAAATCAACTGGAAAAATATTATAGTAGAGTATGTTCTGAACTCCAGAAAAGATCGAAGGATTTGATGCACAGGATTGCAGCGGATGAGTCTGTCCTTCGAAGGTCCACTCGAGTTCGAGCCCCTCCCAGGCAAAACCCTGCAAATGCTTTCCTCAATTATGTTAACAAGTGGAAAGTAGATTAG 2130 0.3962 MPLLRRKPFSLADPPKDLKPDEHVYQIRFTKEIFRDYNDYLNRINLYRQRIWMCKVTGKTNLTYEEALVSEKSASEKVQQFPKELRASVLRIIQYSMLPLKDLADFIAEKLEGRFFVGAELHGKKDNELYPCRILKVIPKGVEKFYYEVAWLDKDKNIGEKAEVNAKDLVLKKPLFSRNMLKSFIRESTYRNAPWVLHEEVAKNHGISTDIPEELRGRVCFKNGLLTCSKKRKTEESLDETENCKRKKLDGAEFDGSTEEQQENGQHKVERIKYPIDDLLVKPSPHDPVLANRPSPSRDFNVPMNCVGNLLMVWDFCTTFGKVLHLLPYSLEDFENAICHKDSNIVLLVESHAALFRVLIQDDSEYTEAVKNRRTKSKITMVNWTEYLCHFLEMINVPELRQCEATIKRGHYGLVDINAKLEILYELVNRVIETTIFREKLGEIIEQRHVLGVSRREEVLEDARKRRKEKEMLKAEIESNEVVNGHHLNSENVSSNSDDDIQNGHIGKKRNGEIESSSEDNTIGSLIKHSNPAPKNMPKSKKPNSEPKQPTENGKELPKQFKSDKDSPEKNSKEQRKEYFEREMEKRPIRRSPLGKDRNYNRYWWFRRDGRIFVENSDSKEWGYYSSKEELDAFMGSLNCKGERERALRNQLEKYYSRVCSELQKRSKDLMHRIAADESVLRRSTRVRAPPRQNPANAFLNYVNKWKVD 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03386 709 Pfam DDT domain 305 362 IPR018501 -
Aip03g03386 709 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Aip03g03386 709 MobiDBLite consensus disorder prediction 483 501 - -
Aip03g03386 709 MobiDBLite consensus disorder prediction 541 586 - -
Aip03g03386 709 MobiDBLite consensus disorder prediction 477 586 - -
Aip03g03386 709 ProSiteProfiles DDT domain profile. 304 365 IPR018501 -
Aip03g03386 709 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 707 - -
Aip03g03386 709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 655 IPR028941 -
Aip03g03386 709 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Aip03g03386 709 MobiDBLite consensus disorder prediction 502 516 - -
Aip03g03386 709 SMART testlast3 304 365 IPR018501 -
Aip03g03386 709 Coils Coil 456 480 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03386 570 654 Homeobox Transcription Factor Family AT1G28420 38.298 1.84e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aip03g03386 WAC_Acf1_DNA_bd 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03386 - - gmx:100789956 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03386 03 111119500 111125257 Aip03g03386 03 111119500 111125257 ECH