Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03374 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGACGAAAGAGGAAGATGAGCGCCTCATCAACTACATCAAGCTTCATGGCGAAGGCTGTTGGAGATCCCTTCCCAAAGCTGCAGGGTTGCTTAGGTGTGGGAAGAGTTGCAGGCTGAGATGGATAAATTACCTAAGGCCTGATCTCAAGAGAGGCAACTTCACTGACGAAGAAGACGAGCTCATCATCAACCTCCACAGCTTACTCGGTAACAAATGGTCTCTAATAGCAGCGAGGTTACCGGGAAGAACCGATAATGAGATAAAGAACTACTGGAACACCCACATAAAGCGTAAACTTTATAGCCGTGGAATTGACCCTCAAACCCATCAACCACTCAACGCTGCACCCGCACCTTCCACCAAAACAATAACCCCACCACCAACAACAACAGCAGTTCCACCTACGGCCACAAACAACAACGAAAACAAGAAGAGAACATACAACAGCAGCGACAACAGCATCAATTTTCGTCTATTTGGTGTTGCTTGTGCCAAGAATAATAATACTGATGGAACAGACTACTACTCATCAGGAGGGGGTGATGAAGATTCAAACAGCAGCAGTGGCGTCACAACGGAGTTAGAAGCATATCCTAAACTCAACTTGGACCTCTCCTTAGGCCTTCCCTCTCCTCTTTCTTCCATAATCCACACACAAAACCCAAAACGACACCGTCAACAACTACAAGCTGCTTATTCCTTTTGTGTGTGTCAAACTCTAGGGTTTCAAAAAAGTAATAACCAACCTTGTGCCTGCAAACCCAAGCCTGGTGCTGCTACTGCAAGTGCTGGTGGTGCTTCGAATAATAGTAGTAATGATAATAATGTGTATAACAGATTTCAATTTACAAGCTAA 906 0.4492 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHQPLNAAPAPSTKTITPPPTTTAVPPTATNNNENKKRTYNSSDNSINFRLFGVACAKNNNTDGTDYYSSGGGDEDSNSSSGVTTELEAYPKLNLDLSLGLPSPLSSIIHTQNPKRHRQQLQAAYSFCVCQTLGFQKSNNQPCACKPKPGAATASAGGASNNSSNDNNVYNRFQFTS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03374 301 MobiDBLite consensus disorder prediction 122 166 - -
Aip03g03374 301 CDD SANT 69 112 IPR001005 -
Aip03g03374 301 PANTHER TRANSCRIPTION FACTOR MYB7 1 249 - -
Aip03g03374 301 CDD SANT 16 61 IPR001005 -
Aip03g03374 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip03g03374 301 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 249 - -
Aip03g03374 301 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Aip03g03374 301 SMART sant 13 63 IPR001005 -
Aip03g03374 301 SMART sant 66 114 IPR001005 -
Aip03g03374 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip03g03374 301 Gene3D - 14 66 - -
Aip03g03374 301 MobiDBLite consensus disorder prediction 150 166 - -
Aip03g03374 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip03g03374 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g03374 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip03g03374 301 Gene3D - 68 134 - -
Aip03g03374 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03374 Aip-Chr3 110580524 110582030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03374 1 233 MYB Transcription Factor Family AT4G09460 59.657 1.02e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g03374 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03374 K09422 - pvy:116145632 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03374 03 110580524 110582030 Aip03g03374 03 110580524 110582030 ECH
Aip03g03374 03 110580524 110582030 Aip08g03253 08 123524426 123526021 PCT