Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03371 ATGGTGAGGATTTGTTTAATGTATGTCACAAGTGGAATATTTTTTATGGCTCATCTGGATAAGCGAAATAATCCAATCTATATGGATCTTTATGAATCTCACTATGTTAAAGATATTATTGGGATGTCTTTGTTAAAAGTTATCCATGATAAGTTAGGGTTAAACTACTTTGATGTATTGGATGATGTTGCTTCTGGTATAGAGGATAATGGGATGCATGAGAATATGAAAAAATATGTTATTCTATATCATTGCAAGATATTAACTAATCATGATGTCAAGGCTGATCGAGTTTATATCCCGTATCAATTTGCTAAGTTACTGCTTGAGTCAGGAGGATCAGAAACTTGGAAGTCTGTTGTTGAGGAATCAAAGATTACTACAAGCTTTGAAATGAATGTTTTGAAGAGTAAAGGCAAAGAACGAGAATACAAAATTGGTCCTAAATGGAAAGATTTTGTAAAAATGCACAAACTTAAAACCAGAGATTCATGTGTGTTTGAGATGGTTTCGAAAGAGGATCAGCTGATTCGAGTTTCTAATTTCAAATCATCTCCTGTAGTTGTGCGCCATCAAACCCCTCCAGAGATTATGATGAAAATCTGTGGAGTTGGAGAGAGGCGCCAGGGAGGGAGCAGGAGCGTGCTCAGCACTTGGGTGGGCAAGTTGGATCTATCGATTGTCGTTGATAGAGGCGCCGAGGAGGAACGATCGAACAGCATGATCAGATCCAGTGGCAGATTATTCAGGAGGGAGTTGGAGCATGCTCAGCATCTGGGTGGTGAAAGTCGACTTATTGTTTGCCTTGATGAGGATGAATTCATTGATGTTGATTTAAAAGCAAGTGGCAAGCTACAACTGCTTAATTCGATGCTCATGGAGTTGAAGGCTAAAAACTTACGGGAGCGAAGAGTTGCTGTCCTTTTCTCCATGGGTGCAGCAGCTGGATTATTGATAGATCCAAGTACAGTATTCCCTTTTGGTAGAACAGCTGCTGATCTTGCTTATAGCAATGGACATAAAGGAATATCTGGTTTTCTTGGAGAGTCATTATTTACTGGCGACCGTGCATTACATCCAATGCATGATCTAATTGAAGATGGTAGGAATAAACCTTCAGGTGGGAAGAAGACCAAGGTTCGTTGGTCTTCTTGCAATCATGAGGATTTGGAGTTTCTGTTTGTTCTATGTCATGGCTAA 1200 0.395 MVRICLMYVTSGIFFMAHLDKRNNPIYMDLYESHYVKDIIGMSLLKVIHDKLGLNYFDVLDDVASGIEDNGMHENMKKYVILYHCKILTNHDVKADRVYIPYQFAKLLLESGGSETWKSVVEESKITTSFEMNVLKSKGKEREYKIGPKWKDFVKMHKLKTRDSCVFEMVSKEDQLIRVSNFKSSPVVVRHQTPPEIMMKICGVGERRQGGSRSVLSTWVGKLDLSIVVDRGAEEERSNSMIRSSGRLFRRELEHAQHLGGESRLIVCLDEDEFIDVDLKASGKLQLLNSMLMELKAKNLRERRVAVLFSMGAAAGLLIDPSTVFPFGRTAADLAYSNGHKGISGFLGESLFTGDRALHPMHDLIEDGRNKPSGGKKTKVRWSSCNHEDLEFLFVLCHG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03371 399 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 297 377 - -
Aip03g03371 399 SMART B3_2 84 185 IPR003340 GO:0003677
Aip03g03371 399 Pfam B3 DNA binding domain 86 177 IPR003340 GO:0003677
Aip03g03371 399 SUPERFAMILY DNA-binding pseudobarrel domain 83 179 IPR015300 -
Aip03g03371 399 CDD B3_DNA 85 177 IPR003340 GO:0003677
Aip03g03371 399 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 297 377 - -
Aip03g03371 399 Gene3D - 73 185 IPR015300 -
Aip03g03371 399 ProSiteProfiles B3 DNA-binding domain profile. 83 185 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03371 Aip-Chr3 110496519 110500880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03371 301 353 CAMTA Transcription Factor Family AT5G09410 67.925 6.51e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip03g03371 B3 2.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03371 K21596 - adu:110279727 275.018