Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03364 ATGGCAAGCACCTACAACTACCTGAAGGATGTGGATGCATCTAATGACAATTTGATCTATAGGATCAAGCTGAGGGCATTGAAAATATGGTCACTGTCCCCCGTCCAGCAGAAATACGTAAGACCAACTTTGGAGTTTGTGGCAATGGACCAGCTGGGAGATCGCATCCAATGTTCCATTAGGAATCCACAGCGGAGGCTGTTTGAGGATGAGTTGGTGGAGGGAAAAATATATACCATCTGCAACTTTTCAGTTGCCGTTAATGATAAAAAATACAAGGCCACTAATCATGCTAGCAGGATTTACTTTAAGAGGGATACTCAACTTCGACTAGTTGATGATCCATCCTTTCCTGAGAATGTCTTCCGATTTGTTCCTAACGAAGTCATACTCAACCACACCAACACTCAGTCACATCTTATAGATGTCATTGGTCTTCTGACGGCCAAGGGTGACATAATTGAATTTACTAAAAATGGAAAGAAGAGCAACTACATCGTTCTGGAACTTGACGACATGCAGGGAAAAGGAAAAATTCGCTGTACACTTTGGGAGGAGTTCGCAAGTAAGTTGGTCAAACATATTCAAGAGCAGCCGACGTCTGAGTATATCCTAATTGTACAATTCGCTAAGTTCAATCTATTTAAAGGTACAATGGGGATATCAAACACTACCTATAATTCAAATCTTTACATCAATGCAGACTTTCAGGCGGTAAAGGATTTTTGTAAAAGTGTTCCACCTCCAAATCAACTCTCCCAAATAGCGACTGAACCTGTATACTCCATTGAGGAAGATCTCATTGACAAGTCAATATATAAATCCATTTCTAAGCTCAAGGAATGCATTGAGAATGGGAGCTTTGTTACAATTGGAACTGTTGTTGCAATCGATCCTAAGAACGGTTGGTATAGCATTAATATTAAGGTTGTTGATGACACTGATTCGGCTGCATTTCTGCTGTATGACAAAGAATCTTCCAAATTTCTTGGGATCTCAGCTTCTGATTTCAGACTTGCACAACTGACCAGGGGTGGCACCAATGAGGAATACTCGATAGAGCTTAATTCTTTTAGGGGGAAAAAATTTATCTTCAAAGTCTCCGTGAAGATGGAGGATCTTAACTCATTCCAACCGTGCAAGATAATTGTCATGAAGCTTTGTGGAGACATGTCTGTCATATCAAAATTTATTCAGAAGCATGACATATATCAGCAAAATCTAGCATTAGAGCACTCACAACTACTCAGCATGCAATCTGGGTCTGCAGAGACGCCTAAGCACACATGTTCACCCTCTGTTGAGATTTTGGTCGGCGACACTAATGAGGGTTACTCAACTCCAAAGAGAAACATTGTTAGTGGCGGATGGACTAAACAGCTTATTGATCTCTGTCCGGATTCTGCCGAAGGATCATCCACAAAGTGTAGGAAATTGAAGGATGGCCAGGTTGCTGGTGTTGATAAACCCCATCAGGATTAG 1482 0.4116 MASTYNYLKDVDASNDNLIYRIKLRALKIWSLSPVQQKYVRPTLEFVAMDQLGDRIQCSIRNPQRRLFEDELVEGKIYTICNFSVAVNDKKYKATNHASRIYFKRDTQLRLVDDPSFPENVFRFVPNEVILNHTNTQSHLIDVIGLLTAKGDIIEFTKNGKKSNYIVLELDDMQGKGKIRCTLWEEFASKLVKHIQEQPTSEYILIVQFAKFNLFKGTMGISNTTYNSNLYINADFQAVKDFCKSVPPPNQLSQIATEPVYSIEEDLIDKSIYKSISKLKECIENGSFVTIGTVVAIDPKNGWYSINIKVVDDTDSAAFLLYDKESSKFLGISASDFRLAQLTRGGTNEEYSIELNSFRGKKFIFKVSVKMEDLNSFQPCKIIVMKLCGDMSVISKFIQKHDIYQQNLALEHSQLLSMQSGSAETPKHTCSPSVEILVGDTNEGYSTPKRNIVSGGWTKQLIDLCPDSAEGSSTKCRKLKDGQVAGVDKPHQD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03364 493 CDD RPA1_DBD_A_like 21 107 - -
Aip03g03364 493 Gene3D - 8 114 IPR012340 -
Aip03g03364 493 CDD RPA1_DBD_B_like 142 247 - -
Aip03g03364 493 Gene3D - 303 393 IPR012340 -
Aip03g03364 493 PANTHER REPLICATION FACTOR A 1, RFA1 43 336 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip03g03364 493 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Aip03g03364 493 SUPERFAMILY Nucleic acid-binding proteins 136 247 IPR012340 -
Aip03g03364 493 SUPERFAMILY Nucleic acid-binding proteins 303 387 IPR012340 -
Aip03g03364 493 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 43 336 - -
Aip03g03364 493 Pfam Domain of unknown function DUF223 47 136 IPR003871 -
Aip03g03364 493 Gene3D - 116 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03364 Aip-Chr3 110284788 110287371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03364 44 236 Core DNA Replication Machinery Family AT2G06510 27.638 3.56e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03364 - - ahf:112707100 752.666