Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03342 ATGGACCCTGACGCATTCACGTCCACCCTCTTCAAGTGGGATTCGCGCACCATCCTCCCAACTTGTTCTTCCTCACTGATGGAGGGGACCGGGGGGCTGGAGGAGCTGTTCCATGCGTACGGGGTGAGGTACTACACGGCGGCGAAGGTGGCAGAGCTGGGGTTCACGGCGAGGACGCTGGTGGACATGAAAGAGGAGGAGCTGGAGCACATGATGAACAGCCTTTCCCAGATCTTCCGTTGGGATCTGCTGGTTGGCGAGCGCTATGGCATCAAAGCTGCCGTCCGAGCTGAGCGTAGACGCATCCAAGACCATCATCAACTTCGAATTGATTCTCTCCCTCAAGAAGGGGTGCAACAACATAAAGAGGCGGTGGGGAGCACGTGGGACGTCAGGAAGAGGATGAGAAGCAGAAGCAAGACGATGAGTGATGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGAGACAAAGAGAGCACCCGTTCATAGTGACGGAGCCTGGGGAAGTGGCACGTGGCAAGAAGAACGGCCTGGATTACCTATTCCATCTGTATGAGCAATGCCGTGATTTCTTGATCCAAGTACAGAACATTGCCAAGGAAAGCGGTCAAAAATGCCCTACCAAGGTGACAAACGAAGTGTTTAGGTACGCCAAGAAGGCAGGAGCTCATTGCATAAACAAGCCAAAGATGAGACACTACGTTCACTGTTACGCGCTTCACTGCCTTGACAAAGACACTTCCAATCAGCTCAGGAGGCAGTTCAAGGAGACAGGCCAGAACGTTGGGGCATGGAGGCAGGCCTGCTACAACCCTCTAGTTGCCATTGCTGCCCTCCACCACCACGACATTGATGCCATCTTTAACTCTCATCCTCGCCTATCCATCTGGTACGTTCCCACGAAGCTTCGCCAGCTTTGTCACGCCCACAGGAACAATTCAGCTTCCACCTCCACCCATCATCATCTTCTCTTCTAG 975 0.5374 MDPDAFTSTLFKWDSRTILPTCSSSLMEGTGGLEELFHAYGVRYYTAAKVAELGFTARTLVDMKEEELEHMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIQDHHQLRIDSLPQEGVQQHKEAVGSTWDVRKRMRSRSKTMSDEEEEEEEEEERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKESGQKCPTKVTNEVFRYAKKAGAHCINKPKMRHYVHCYALHCLDKDTSNQLRRQFKETGQNVGAWRQACYNPLVAIAALHHHDIDAIFNSHPRLSIWYVPTKLRQLCHAHRNNSASTSTHHHLLF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03342 324 MobiDBLite consensus disorder prediction 116 159 - -
Aip03g03342 324 PANTHER PROTEIN LEAFY 1 318 IPR002910 GO:0003677|GO:0006355
Aip03g03342 324 MobiDBLite consensus disorder prediction 126 143 - -
Aip03g03342 324 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 152 314 IPR035209 GO:0003677
Aip03g03342 324 Coils Coil 132 152 - -
Aip03g03342 324 Gene3D Protein LEAFY 144 314 IPR038276 -
Aip03g03342 324 Pfam Floricaula / Leafy protein SAM domain 30 106 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03342 Aip-Chr3 109815486 109816608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03342 1 312 Orphan Transcription Factor Family AT5G61850 55.357 3.93e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Aip03g03342 C_LFY_FLO 3.1e-99 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03342 - - adu:107480074 619.772