Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03341 ATGAATTATTTATATCTAGCAACTGAGGATTGGGATTGGGAACGTAACTCAGTATGGATTGTCACTTTTTCTCCGCTTCCAGTGGATCGAAAACATGGAAAGAGGCCATTTCCCCTTGAAGAAAAAGAAGAAGAAGAGAAAGAGGAGAAGGAGCACGTGTTCCCGATTTACTCTGAACGTTCCCAGCAAGACACGTCGGCGGTGGTATCAGCTCTTGTTCAAGTCATTGGTGGCAATCCACCGCATCATCATCAACAAATCTCTCACTCCTCCACTTCTATGGACAACAATCAACAATCTCAACCACCATCTATAATGCAAGATCAAGTGGTAAGAAGACACTACAAAGGGGTTAGGCACCGGCCATGGGGGAAATGGGCCGCGGAGATTCGAGATCCGAAGAAGGCAGCAAGGGTTTGGCTTGGAACTTTCCAAACTGCCGAGGAAGCTGCACTTGCTTATGACGAAGCCGCTCTTAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACTCGTGAATTCGGTTACCTCACTAACCGTCCTCCACAACCGGAAATTGGCAATAACAATGGTCAACAAGTACCTAGTACTACTACCACAATTTCTAATGCTTCAGCTTCACAATTTTCTGGCAGTAACAACAACAATTTCAATTATGCTTTGCCTCATTTGTATGGGAACCATAAAAATATGTTTGTTTCTTCCTCTTCGTCTTCATCTTCATCTTCTGGATTTTCTATGCAATTTGGAGGTTCTTCTTCTAAGTCTCCTCCTAGGAATTAA 801 0.4345 MNYLYLATEDWDWERNSVWIVTFSPLPVDRKHGKRPFPLEEKEEEEKEEKEHVFPIYSERSQQDTSAVVSALVQVIGGNPPHHHQQISHSSTSMDNNQQSQPPSIMQDQVVRRHYKGVRHRPWGKWAAEIRDPKKAARVWLGTFQTAEEAALAYDEAALRFKGSKAKLNFPERVHLTREFGYLTNRPPQPEIGNNNGQQVPSTTTTISNASASQFSGSNNNNFNYALPHLYGNHKNMFVSSSSSSSSSSGFSMQFGGSSSKSPPRN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03341 266 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Aip03g03341 266 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Aip03g03341 266 MobiDBLite consensus disorder prediction 239 266 - -
Aip03g03341 266 MobiDBLite consensus disorder prediction 184 204 - -
Aip03g03341 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF114 32 256 - -
Aip03g03341 266 MobiDBLite consensus disorder prediction 32 51 - -
Aip03g03341 266 PANTHER DNA-BINDING DOMAIN 32 256 IPR044808 GO:0003700|GO:0009873
Aip03g03341 266 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Aip03g03341 266 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Aip03g03341 266 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Aip03g03341 266 MobiDBLite consensus disorder prediction 78 107 - -
Aip03g03341 266 MobiDBLite consensus disorder prediction 81 107 - -
Aip03g03341 266 MobiDBLite consensus disorder prediction 188 204 - -
Aip03g03341 266 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Aip03g03341 266 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Aip03g03341 266 Gene3D AP2/ERF domain 113 173 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03341 Aip-Chr3 109807259 109811194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03341 32 191 AP2-EREBP Transcription Factor Family AT5G61890 58.929 2.93e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g03341 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03341 - - gmx:100793410 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03341 03 109807259 109811194 Aip08g03293 08 123956891 123959146 PCT