Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03333 ATGCCTTCTCCAATGGTGGATCAGAGGGGAGTTTCTGCTTCATCTCACTTTTTTGATGACATTTCTTTTCGTTCTGAGAGGGATGCTGGAATACGGAAGTTCAAATCCATTCATGATCAATATCCACAAGGAAAAAATGGAATGATAGCATCCCCTGGAAGCAATTTGAATTCTTCATCTGTACTGGAAAGAAGTGCAAAATCTGGTTTGCCAATGTCATGCACCAGTCTATCTATTGAAAATGTGGAACAGCTAAAATTTGGTGGTGAAGGCATTTTTGATGCGCTGATGGTTTCCAAGGAATCATCACATTATCATCACAGATCAAGGTCTGATGTATGTATGCGCTCCGGACCGAACTCACCTGGTGTAATTGGGGACAAGTTTGTTTCCAGTGCAGCCACATGTGAAAGTACTCTATTCTCGAGCTCATTGTCTGATATGTTTTGCCAAAAGTTGAGGTTGTTCGGGAAAGATGCTTTATCTGATCAGCCCGATATTATTGATTCTGTTCCCGAGGAAGAGCCTTATAAATCTCTTGAAGAAATAGAGGCTGAAACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCAATGATGAGTCAAGATATAACAATACTAATGCCAGAAAAAATGATGACTTGGAGGATTTTGACTTGTTTAGCAGTGGGGGAGGCATGGAGCTGGAAAGAGATGAACATCTGAATGCAGGATTAAGAACTAGTGCTCTGGAGGGAGATTCAGGTTTTGTTGGAGGTCCTAAAGGAAAATTTCCTTTTGTCACACAACCTTCTAGAACACTCTTTGTTCGAAACATTAATAGCAACGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATTAGAACCATGTATACAGCTTGTAAACATCGTGGTTTTGTCATGATTTCTTATTTTGACCTAAGAGCTGCACAAAGTGCAACGCAAGAACTTCAAAATTGGCCACTGAGGTTAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTTCTGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTATTTCAAATGATGAACTCAAACAGATTTTTGGATTTTATGGAGATATTAAAGAAATTTTTGAATCTCCTGAAATGAAACAGCACAAATTTATAGAGTTTTATGATGTACGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGACATTGCTGGGAAGCAGATCAAGATTGAACCAGGACATCCTAGTTTGATGCAGCAGTCTCATAAGGGGCAAGATGAACCAGATCTTGGTCAGAGTATTATTGACAACTTAGCACTGAGACAGAATAATTTACTGATTTCAGAGGACAATTATTATCCCAAACACTTTTGGTGTTCTAACTGGACATCATGTGCAGCAACGGTGTCTGCTGGAGTGATTGGATCTGGCTTGGAAAATGGTTACAATCAGGGATTTCAATCTGGAATGGCGCAACCTTTAAACACGTATAATGATAATGCATTTGGACATATAAATTCTAGCATTCACAACACAGTGAGAGGATCATCAGCTTCAAATGTTTCTGGCGTTTCTGAGTCCAATATATTTGTTGACGCAATAAAATTTGCTTCTAGTCCGAGATTTCATCCTCATTCCTTACCCGAGTATCATGATACTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGACTAGCAGTGTCAATACTGGAGTGACCGAAGCCTCTGACAGCAGGCACATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGATCCGGTCACATCATGGACTTTATCAGATGTGGAACAGCTCCAATTTGCATCAGCAGTCTTCATCAGGTACCATGCTGTGGCAGAAAAGACCATCATTTGTTAATCTTCCACAGATGCCAAGCTTTGCCATAACACCACCTCATATGTTGAGGTCACAACACATGGACCACAATGTTGCATCAGCACCAGTGTCACCTTGGGGAAGGCAACATTCGCACCTAGCAGAATCCCCTGATGCTTCTGGTTTTGTGGGAAGTGGAGGTTTTCAGGGTTCCTGGCAATTGCTTTCTCCAGAATTTTCTCCTCGTTTGTTTCCTCATGCCAGTCCTAAAGGCACTGAACTGCCATCCAATGCTGGGCAGAGTTCTCCTAAGCATCATGGTTTCCCTGGAAGACATTCTATGAATTCAACGTCAAAAATTGATTCTGCCAATGAACGGATGAGAAGCCTTTATCACCGTAGGAGTGAAACAAACAATGCTGATAAAAAACAATTTGAACTTGACCTAGGTCGCATAATGCAGGGGGAAGACACCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACCTCAAAGATGCTTCTTGCTGCTATTGATGAGCGTTGTAGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGAATAAATGTAATGTTGGTTATGCATTTATAAATATGATCGATGCTGCTCAAATTATTCCTTTCCACCAGACTTTTAATGGGAAAAAATGGGAGAAGTTCAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCCCATTTCCAGAACTCAAGCCTGATGAATGAAGATAAACGTTGTCGCCCTATTCTCTTCCACACTGATGGTCCAAATGCTGGTGATCCAGAGCCTTTTCCTATGGGTACCAATATTAGAGTGAGACCTGGAAAATCTCGCACTGCTGGTAATGACGAAAGTCGCAACCAACCAAGTCCAAGAATTTTGATAAATGTAGAGTCTCCTAATGGACTTGACTCTGCTTAG 2895 0.4086 MPSPMVDQRGVSASSHFFDDISFRSERDAGIRKFKSIHDQYPQGKNGMIASPGSNLNSSSVLERSAKSGLPMSCTSLSIENVEQLKFGGEGIFDALMVSKESSHYHHRSRSDVCMRSGPNSPGVIGDKFVSSAATCESTLFSSSLSDMFCQKLRLFGKDALSDQPDIIDSVPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDESRYNNTNARKNDDLEDFDLFSSGGGMELERDEHLNAGLRTSALEGDSGFVGGPKGKFPFVTQPSRTLFVRNINSNVDDSELKALFEQYGDIRTMYTACKHRGFVMISYFDLRAAQSATQELQNWPLRLRKLDIHYSIPKVNASEKDIGHGTLMLSGLDSSISNDELKQIFGFYGDIKEIFESPEMKQHKFIEFYDVRAAEAALRALNRIDIAGKQIKIEPGHPSLMQQSHKGQDEPDLGQSIIDNLALRQNNLLISEDNYYPKHFWCSNWTSCAATVSAGVIGSGLENGYNQGFQSGMAQPLNTYNDNAFGHINSSIHNTVRGSSASNVSGVSESNIFVDAIKFASSPRFHPHSLPEYHDTLANGSPYNFSSTISNMTSSVNTGVTEASDSRHIQGMGSTGNLAEFNAGGNGIRSHHGLYQMWNSSNLHQQSSSGTMLWQKRPSFVNLPQMPSFAITPPHMLRSQHMDHNVASAPVSPWGRQHSHLAESPDASGFVGSGGFQGSWQLLSPEFSPRLFPHASPKGTELPSNAGQSSPKHHGFPGRHSMNSTSKIDSANERMRSLYHRRSETNNADKKQFELDLGRIMQGEDTRTTLMIKNIPNKYTSKMLLAAIDERCRGTYDFLYLPIDFKNKCNVGYAFINMIDAAQIIPFHQTFNGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRVRPGKSRTAGNDESRNQPSPRILINVESPNGLDSA 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03333 964 MobiDBLite consensus disorder prediction 720 756 - -
Aip03g03333 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 456 - -
Aip03g03333 964 Pfam RNA recognition motif 2 797 893 IPR007201 -
Aip03g03333 964 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 479 957 - -
Aip03g03333 964 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 456 - -
Aip03g03333 964 SUPERFAMILY RNA-binding domain, RBD 799 884 IPR035979 GO:0003676
Aip03g03333 964 SMART rrm1_1 356 424 IPR000504 GO:0003723
Aip03g03333 964 SMART rrm1_1 271 339 IPR000504 GO:0003723
Aip03g03333 964 SMART rrm1_1 799 875 IPR000504 GO:0003723
Aip03g03333 964 Gene3D - 264 352 IPR012677 -
Aip03g03333 964 CDD RRM3_MEI2_like 800 885 IPR034454 -
Aip03g03333 964 CDD RRM1_MEI2_like 269 344 IPR034453 -
Aip03g03333 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 479 957 - -
Aip03g03333 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Aip03g03333 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 332 IPR000504 GO:0003723
Aip03g03333 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Aip03g03333 964 MobiDBLite consensus disorder prediction 912 964 - -
Aip03g03333 964 Gene3D - 353 447 IPR012677 -
Aip03g03333 964 MobiDBLite consensus disorder prediction 677 697 - -
Aip03g03333 964 SUPERFAMILY RNA-binding domain, RBD 268 425 IPR035979 GO:0003676
Aip03g03333 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Aip03g03333 964 MobiDBLite consensus disorder prediction 939 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03333 Aip-Chr3 109555296 109561131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03333 268 438 Eukaryotic Initiation Factors Gene Family AT1G71770 24.615 1.79e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03333 - - gmx:106798747 1319.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03333 03 109555296 109561131 Aip08g03297 08 123994977 123999457 PCT