Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03319 ATGCATTTCGCAAAGCTCGATGATTCCCCCATGTTCCGCCAGCAGCTGCAGTGCTTGGAGGAAAGTGCAGAATCATTACGCATCAGATGCTGCAAATTTCACAAAGGATGTCGAAAATATACGGAAGGATTAGGAGAGGTATATGAAGGGGACGTGGCATTTGCTACTGCCCTTGAAGATTTTGGAAGTGGCCATAATGATCCTCATTTTGCTGCTTTAGGAGAACCTGTGATGAGCAAATTTACTACTGCTTTGAGAGAAATCAGTACATACAAAGAACTTCTTCGGTCACAGGTAGAGCAGATGCTCACTGACCGGTTACAACACATTATGAATGTTGATATCCATGAAGTCAAGGAAGCTCGGAAGCGTTTTGACAAAGCTTCTGCTGTATATGATCAGGCACGAGAAAAGTTTATGTCACTGAAAAAAAGCACAAAGCCTGATATTGCCACTACCATGGAAGAGGAATTGCAGAATGCAAGAACCTCATTTGAAGAAGCACGTTTCAATCTGGTTGTTGCTCTCAATAATATTGAGGCCAAAAAGAGATTTGAGTTCTTAGAGGCTATCACTGGAATCATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAACTATTACATCAGATGCAACCTTTCTTTAGCGAGATTTTGGATTATGTACAGCAATCAAGAGAAAGTTATGATGAAGAGCAGATTTCTCTTTATAAAAGAATGGAAGAGTACAAAAAACGAGTTTATCAAGAGAGTAGAATGTCCTTAAATGGCCCTTATGGTTCTCCTAATGGAGACTCTGTCCATCCTTTTTCTAGGATATCAAATGAAGTGGCTGATGTAGTGAAGGAATCTGCTGCAAATGGAAAGGTTGAAATCATTAGACAAGGTTTTCTCTCAAAGCGATCCTCTAATTTAAGGGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGGGGAATGCTATACTACTATCGCAAACCATGGAATGGTGGCACTGAAAATGGTTCTGGGCTTCTAAGTCGATGGCTTTCTTCTCATTACCATGGAGGTGTCCATGATGAAAGATACGCAGCACGTCACACAGTAAACCTGCTGACATCCACAATTAAAGCTGATTCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATCTCACCATCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAACCGGAGTCATTGCATCCTTGTTGAGCGTCCAGTCACTGGGAACGCCTCCCTGTGCTAAGCGAAAAACTGGAGACAGTGACACTGCTAAGAAGACTGATGTGCCAGAAAGTTCTCTAGATGATGGTCATACCGTGACTGACAAGTCTGAATCAAGGAAATGCACTACTCCCGGTAGCCAATATCGTACATATAAGAGTTTGCAGTTGCAAAGACACAATATGAAAAGTGAAAAGCCAATTGAAGTTCTAAGAAGGGTGAGTGGAAATGACAAATGTGCAGATTGTGGTAAACCTGAACCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCATCGTAATCTTGGAGTACATATATCAAAAGTAAGATCATTGACACTTGATGTGAAAGTCTGGGACCCTTACGTCTTAGCCATGTTTAAGGCACTGGGCAATTACTTTGCAAACTCAGTTTGGGAAGAGTTAGATTCAAAGAGTACTTTGCAAACTGATGATAATGCATCTGTTGGTTCATCCAATGCCAGCGGAGACAAAGTAAAAAAACCGAAACCTGATGATTCTATTTCATTAAAGGAGAAGTTCATTCATGCAAAGTACTCTGAGAAAATGTTCATTTGCCGAACAAAAGAAAGCCACTCTGTGGCAAAAAAAGTGTGGGAAAGCATTTGTGCCAATGACATGAAAGCAGCGTACCGGCATATTGTCAAGTCAGGTGTGGATGTCAATGCCATCAATGGCCACACATTATCTGAAGGTTCTTGCAACATGACTTCGTCAGATAAATCAAACATATCATCACCATCTCAACGTGAAAATCAGCTGATGAATGAGAACATACAACTTGGTTCTGGTGTGCTTCACCTGGCATGCATCACTGCTGATGCTGGTATGGTGGAGTTGCTCCTACAATATGGTGCAGACATTAATGCTTGCGATTCGAAAGGTCAGACACCACTTCATTACTGTATTACTGCAGGGAATACTGAAGCTGCAAAAGTGCTACTTATGAGAGGGGCCAATTCAAATGCTGCAGATAAAGAAGGCAACACTCCTATTAAGCTAGCATCACAATCCAACTCCATTGACGCTGAAACCTTGGCTCTCTTGGCAAGAAGATGA 2370 0.4143 MHFAKLDDSPMFRQQLQCLEESAESLRIRCCKFHKGCRKYTEGLGEVYEGDVAFATALEDFGSGHNDPHFAALGEPVMSKFTTALREISTYKELLRSQVEQMLTDRLQHIMNVDIHEVKEARKRFDKASAVYDQAREKFMSLKKSTKPDIATTMEEELQNARTSFEEARFNLVVALNNIEAKKRFEFLEAITGIMDAHLRYFQQGYQLLHQMQPFFSEILDYVQQSRESYDEEQISLYKRMEEYKKRVYQESRMSLNGPYGSPNGDSVHPFSRISNEVADVVKESAANGKVEIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWNGGTENGSGLLSRWLSSHYHGGVHDERYAARHTVNLLTSTIKADSDQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKITGVIASLLSVQSLGTPPCAKRKTGDSDTAKKTDVPESSLDDGHTVTDKSESRKCTTPGSQYRTYKSLQLQRHNMKSEKPIEVLRRVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPYVLAMFKALGNYFANSVWEELDSKSTLQTDDNASVGSSNASGDKVKKPKPDDSISLKEKFIHAKYSEKMFICRTKESHSVAKKVWESICANDMKAAYRHIVKSGVDVNAINGHTLSEGSCNMTSSDKSNISSPSQRENQLMNENIQLGSGVLHLACITADAGMVELLLQYGADINACDSKGQTPLHYCITAGNTEAAKVLLMRGANSNAADKEGNTPIKLASQSNSIDAETLALLARR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03319 789 SMART ANK_2a 698 727 IPR002110 GO:0005515
Aip03g03319 789 SMART ANK_2a 731 760 IPR002110 GO:0005515
Aip03g03319 789 CDD BAR_SFC_plant 15 215 IPR035670 -
Aip03g03319 789 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Aip03g03319 789 SUPERFAMILY Ankyrin repeat 640 779 IPR036770 -
Aip03g03319 789 SUPERFAMILY PH domain-like 203 414 - -
Aip03g03319 789 Gene3D - 285 424 IPR011993 -
Aip03g03319 789 SMART PH_update 293 417 IPR001849 -
Aip03g03319 789 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 789 - -
Aip03g03319 789 SMART arf_gap_3 487 628 IPR001164 GO:0005096
Aip03g03319 789 PANTHER CENTAURIN/ARF 1 789 IPR045258 GO:0005096
Aip03g03319 789 ProSiteProfiles Ankyrin repeat profile. 731 763 IPR002110 GO:0005515
Aip03g03319 789 MobiDBLite consensus disorder prediction 580 602 - -
Aip03g03319 789 MobiDBLite consensus disorder prediction 433 460 - -
Aip03g03319 789 Pfam PH domain 294 414 IPR001849 -
Aip03g03319 789 Pfam Putative GTPase activating protein for Arf 489 622 IPR001164 GO:0005096
Aip03g03319 789 ProSiteProfiles Ankyrin repeat profile. 698 730 IPR002110 GO:0005515
Aip03g03319 789 Coils Coil 118 138 - -
Aip03g03319 789 Gene3D Arf GTPase activating protein 469 626 IPR038508 -
Aip03g03319 789 CDD ArfGap 490 616 - -
Aip03g03319 789 Pfam Ankyrin repeats (3 copies) 703 779 IPR002110 GO:0005515
Aip03g03319 789 Pfam BAR domain of APPL family 6 233 - -
Aip03g03319 789 SUPERFAMILY ArfGap/RecO-like zinc finger 487 623 IPR037278 -
Aip03g03319 789 MobiDBLite consensus disorder prediction 426 468 - -
Aip03g03319 789 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Aip03g03319 789 PRINTS HIV Rev interacting protein signature 499 518 IPR001164 GO:0005096
Aip03g03319 789 PRINTS HIV Rev interacting protein signature 518 535 IPR001164 GO:0005096
Aip03g03319 789 PRINTS HIV Rev interacting protein signature 541 562 IPR001164 GO:0005096
Aip03g03319 789 Gene3D - 627 789 IPR036770 -
Aip03g03319 789 CDD PH_ACAP 295 419 - -
Aip03g03319 789 ProSiteProfiles Ankyrin repeat region circular profile. 731 763 - -
Aip03g03319 789 ProSiteProfiles PH domain profile. 292 415 IPR001849 -
Aip03g03319 789 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Aip03g03319 789 ProSiteProfiles ARF GTPase-activating proteins domain profile. 487 631 IPR001164 GO:0005096
Aip03g03319 789 ProSiteProfiles Ankyrin repeat region circular profile. 698 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03319 Aip-Chr3 109269606 109276312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03319 469 622 C2H2 Transcription Factor Family AT3G07940 37.975 6.44e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03319 K12489 - gmx:100792517 1130.55