Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03310 ATGTCCAGCACAAACAGCACTTGTCTCATGGAAGAAAGAGAGCTCTCTGATGCCAACAACACCTATGAACTTGTCCCTATTCCTATCATGCCTCCTCCTCAGGTAGTCAATGAAGATTGGTACATGCCAAACAACAACATCAACAACACTGTTACTACTATCCAAAATCAACCTCCGGATTCAGATTCAGATACAAGGGACATGAACTTCTTTCACCAAGATAACAACAACAGCAACCCTTTCTTCCATCCCTCTTCTTTCCCTTCATCCATGTCCTTCATCACCAACCTTCAACACTACCCTCATCAGGCCACTCCAAAACCCATATTTTCTTCTCTTCTAAGTGGCATGATGATCCCTAGCAGCACCACCAATAACCCTTTGTATGATCAAAATGGTGGAAATAATAATAGTTGCCAACAGGTGATGGGGTTTCTTGAACCTCAAGCTTTCGCTACCTCTTCATCAAACGTAGATGCTACTCTCTTGGGGGGTTTAGGATTTCCAACAAGTTTGAACAACTCATCATCAGACCCCAATAATAATAGCTTATCAGCAACCATGAGCTGTGTAATCCCACAAGAACATGAAGAAGAAGATAAACCGCCCAATAATAAGTTTGGCCTCTTTGAGGGTTTTCACAATAACATTGAGAATAATACTGGTAGTAGTTCATCATCATGGATGATGAACAACAAGAAAATCAACGTCACAGATGAAAGAGGAAAGGGCAAACTTGATGAGGAGGAACAACAAGGGAATAATAATGAAGAAGAGAAAAGGAAGCTGGAGATGGAAGATACTGGAGATGGAAGTTTGTTAAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATAGTATTGACAACAACAACAACATGATGAAGATGGAATCAGAGAGTAGTAGTAAAAACAAGAATATTATTGGTGAAAACAACAACAGAAACAGTAACAATAATCTCAATTTGCAGAAAGGGAATAATAACAAGAAGAAGACAGGGATGCCTGCTAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAGCTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTTCATAACGAATTGCAATCAATGCCTCCTACGGCACCTGCTTCAAGCTTGCATCATCCTTTGACACCAACTAATAATAATACTGCTACTCTACCGCCAGCAGCTGCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCACTTCTTCATTGCCAACTCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGAGTAAATATCCATATGTTTTGTGATCAGAAACCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGGTTAGATATCCAGCAGGCTGTTATCAGTTTCTTTAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCCGGCTTCCATAACATCATTTAG 1629 0.4156 MSSTNSTCLMEERELSDANNTYELVPIPIMPPPQVVNEDWYMPNNNINNTVTTIQNQPPDSDSDTRDMNFFHQDNNNSNPFFHPSSFPSSMSFITNLQHYPHQATPKPIFSSLLSGMMIPSSTTNNPLYDQNGGNNNSCQQVMGFLEPQAFATSSSNVDATLLGGLGFPTSLNNSSSDPNNNSLSATMSCVIPQEHEEEDKPPNNKFGLFEGFHNNIENNTGSSSSSWMMNNKKINVTDERGKGKLDEEEQQGNNNEEEKRKLEMEDTGDGSLLNSYDDYSDHDMVEDSIDNNNNMMKMESESSSKNKNIIGENNNRNSNNNLNLQKGNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPPTAPASSLHHPLTPTNNNTATLPPAAASLPSRMMMKETASCPTSSLPTPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNII 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03310 542 MobiDBLite consensus disorder prediction 237 268 - -
Aip03g03310 542 Gene3D - 327 400 IPR036638 GO:0046983
Aip03g03310 542 SMART finulus 342 391 IPR011598 GO:0046983
Aip03g03310 542 MobiDBLite consensus disorder prediction 305 336 - -
Aip03g03310 542 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 264 536 - -
Aip03g03310 542 Coils Coil 246 268 - -
Aip03g03310 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 408 IPR036638 GO:0046983
Aip03g03310 542 MobiDBLite consensus disorder prediction 237 279 - -
Aip03g03310 542 MobiDBLite consensus disorder prediction 398 425 - -
Aip03g03310 542 Pfam Helix-loop-helix DNA-binding domain 343 385 IPR011598 GO:0046983
Aip03g03310 542 CDD bHLH_AtAMS_like 339 403 - -
Aip03g03310 542 PANTHER BHLH TRANSCRIPTIONAL FACTOR 264 536 - -
Aip03g03310 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03310 Aip-Chr3 108920327 108924312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03310 337 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 70.787 9.85e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g03310 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03310 - - ahf:112732910 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03310 03 108920327 108924312 Aip08g03309 08 124202592 124208390 PCT