Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03300 ATGGCGGACAACAAGCGGAAAACTACCTCTAACTCCTCTTCCTTCAACAACAATAAGGAGTTGTCAGCAGGGAGAGAAGGGAGAAGTAGCAAGAAACAAAGGAAGAGTAATAATGGTGGGAGTGGGGTGAAGAAGGGAGAGGAGAAGGAAAAAGAAGAGGCTCCAACAGCAACAGCAACAGGGTATATCCACGTTAGAGCAAGAAGGGGCCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGGGAGAAGATAAGTGAGAGGATGAAGATGTTGCAACGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAGATCATCAATTATGTTCAGTCCCTACAAAATCAAGTAGAGTTCTTGTCAATGAAGCTTGCTTCAGTCAGCCCCTTCTTCTTTGACTTTGCAATGGACCTAGATAATGATAACAATAATGGTCACTTGGTTAGACCACTGGATCAGAATGTTCAGAATCAGAAGATAAGCAGCATAGCATCAACACCAGCACTGGCATCAGTACCACAATGCAGCACAAACCAGGTTACACCCTTTGCTGATACAACCACCATGACCACTACCACCGGTACCACCACCTTTCCCGGTGCTAATAATAATAACAGTGACTATCTTTTGGATTATTCATCAACATCACCAGTTTTTCTACAAGGACAGAGGTCATCAAATGTCTTCTCTGAGTATACCGGTGGTCAATTCTGGGAAGTAGAAGAAGACCAACGACAAAAGCAGCTTCTTCATCCATATGGACTTGGCAGCAACTTAGGTTCCTTGAATTAA 816 0.4461 MADNKRKTTSNSSSFNNNKELSAGREGRSSKKQRKSNNGGSGVKKGEEKEKEEAPTATATGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVSPFFFDFAMDLDNDNNNGHLVRPLDQNVQNQKISSIASTPALASVPQCSTNQVTPFADTTTMTTTTGTTTFPGANNNNSDYLLDYSSTSPVFLQGQRSSNVFSEYTGGQFWEVEEDQRQKQLLHPYGLGSNLGSLN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03300 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 136 IPR036638 GO:0046983
Aip03g03300 271 MobiDBLite consensus disorder prediction 41 55 - -
Aip03g03300 271 Pfam Helix-loop-helix DNA-binding domain 75 122 IPR011598 GO:0046983
Aip03g03300 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 121 IPR011598 GO:0046983
Aip03g03300 271 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 271 IPR024097 GO:0006355
Aip03g03300 271 SMART finulus 77 127 IPR011598 GO:0046983
Aip03g03300 271 CDD bHLH_AtBPE_like 61 146 - -
Aip03g03300 271 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 3 271 - -
Aip03g03300 271 MobiDBLite consensus disorder prediction 1 81 - -
Aip03g03300 271 Gene3D - 68 136 IPR036638 GO:0046983
Aip03g03300 271 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03300 Aip-Chr3 108265863 108269186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03300 16 147 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 68.182 5.95e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g03300 HLH 7.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03300 - - ahf:112732895 469.159