Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03296 ATGGATAGCAGCCAACATGAAAATGGTAGGCATAACATGGACTACTACAGAGGAGCACATTCCCTGTGGAATATGGATTCACAGCATCGAGTAAAGGAGCCAAATGCATTAGTCATGAATAAAAAAATAAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTCTAGTACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGTGATTTGGCCCTTCGACAAAGGGATGAAGCACTTGCGCAAAGGGATAATGCCCTAAAGGAACGGGATAATGCCCTTACAGCACTTAAAAGTCAGAACATTTTCAAGTCAGGTGATGGAGTTCAACGTGGATCAAAGCGGATGCGCCAAACTGCATGCAGCCCGAAGGATATATCCAGAAGGGATGTCTCTCCAATGACGGCTAAAGTTTCTGAAGCTGTCAAATCTAATCAAGCTAAAAGAATGCAGGACAAAAATGTAATTAATTCTAAGGTATCAAAACCACATAGCAAGGCAAAGAAAATGGGCGAGGATTTAAATAGGCAGGCAGCTTCTGAAGGGATAAAGTTCAAATCTGAATGGGATATGCAGGATGTTGGCTTGAATTTGGTTGCATTTGATGAAACTATCATGCCGGTCCCAATATGCACCTGCACTGGAGTACCCCGGCAGTGCTACAAATGGGGGAATGGCGGATGGCAGTCTTCTTGTTGTACCACGACATTGTCAGTGTATCCACTGCCACAGCTTCCGAACAAGCGCCACGCCCGCATTGGGGGACGAAAGATGAGCGGGAGTGTCTTTACAAGATTGCTTAGTAGGTTTGCTTTGCAAGGTCATGACTTATCTACACCATTGGATCTTAAGAACTACTGGGCTAGACACGGAACAAATCGCAAGAATACAAGCCAAGGTTGCAGGTTGGGTATGCAAGGTGTAATAACCACTTAG 948 0.4483 MDSSQHENGRHNMDYYRGAHSLWNMDSQHRVKEPNALVMNKKIRSIMAERQAAILVLELEAAISEKNEALAARDLALRQRDEALAQRDNALKERDNALTALKSQNIFKSGDGVQRGSKRMRQTACSPKDISRRDVSPMTAKVSEAVKSNQAKRMQDKNVINSKVSKPHSKAKKMGEDLNRQAASEGIKFKSEWDMQDVGLNLVAFDETIMPVPICTCTGVPRQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSRFALQGHDLSTPLDLKNYWARHGTNRKNTSQGCRLGMQGVITT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03296 315 Coils Coil 73 93 - -
Aip03g03296 315 MobiDBLite consensus disorder prediction 109 139 - -
Aip03g03296 315 PANTHER - 2 299 IPR010409 -
Aip03g03296 315 SMART GAGA_bind_2 1 303 IPR010409 -
Aip03g03296 315 PANTHER PROTEIN BASIC PENTACYSTEINE4 2 299 - -
Aip03g03296 315 Pfam GAGA binding protein-like family 10 298 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03296 Aip-Chr3 108055189 108058040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03296 2 298 BBR or BPC Transcription factor family AT2G21240 55.298 3.70e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Aip03g03296 GAGA_bind 5.6e-88 No_clan