Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03293 ATGGGCTGCGCGCTCCCAAAGCCGGCGCGATCCCTACCAAATCCCGCTGCGCCTCCGGCCAGCAATGTTCGCGGCCACATTCCGACCCAACAGGGTTGGCCGCCGTGGTTGATGGAGGTTGTCGGCGACGCCATCCGAGACTGGACTCCTCGCCGCGCCAACACCTTCGAAAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCGAGAGACCTAGTGAGTGGAAAGATAGTGGCTTTGAAGAAGGTGAGATTTGATGACTTAGAAGGAGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTGTCCTGAAGAAGCTTGATCACCCGAATGTTGTGAAACTTGAAGGCTTGGTTACTTCAAGGATCTGTTCCAGTATCTACTTGGTGTTTGAGTACATGGACCATGATCTTGCTGGCCTTGTTGCTGGCCATGGTCTCAACTTCACTCAGCCTCAGATTAAATGCTATATGAAGCAATTACTATGTGGGCTTGAGCATTGCCACAGCAGAGGTGTATTACACCGTGATATAAAGGGTTCCAATCTGCTTATTGACAATCAAGGAATCCTTAAAATTGCTGATTTTGGACTCGCCGCTTTCTATGATTCCAAACAAACCCGTCCCATGACCAACCGAGTCGTCACTCTTTGGTATCGTCCGCCGGAGCTTCTTCTTGGAGCTACCTTCTATGGTGTTGGTATCGACCTCTGGAGTGCCGGATGCATCTTTGCGGAGCTACTTGCCGGAAAGCCTATCATGCCTGCCCGAACAGAGGTTGAGCAACTGCACAAAATATTCAAGTTATGCGGCTCTCCATCAGAGGATTACTGGAAGAAATATAGATTGCAAAATGCTACACTCTATAAGCCACACCACCAATATAAAAGATGCATCCTGCAAACTTTCAAGGATTTCCCATCTTCTTCATTACCTCTAATTGATACTCTTCTTGCAATAGATCCCGATCATCGCGGCACTACCTCTGCAGCTCTAAATAGTCAATTCTTTAACACTGAGCCCTATGCTTGTGAACCATCAAGTTTACCAATGTATCCTCCCTGCAAAGAACTCGATGTAAAGCTAAGAGTCAAAGAAGCAACAAGGCAGAAAGCTCTAAGCGGAAAAGCTGTTGCAGTTGATGCTGCGACAAGAGTTAGAGCGCGTGAGTGCGCTTTGGCCATTCCAGAGAGCCAAACAAATTTAGATAGGTGGAGAGTTGTGACAAATGCAAATGCCAAAAGCAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGAAGCTGTTGGATATCCATTGAATGCATCAAACAGAGGAACTGTTTTATTTGGTGCCAGTGACACTTCCTTTGGCTCAAAAACTTCAAGAACTCATGGAACTAGTATTGCTGCTGCTGCTAGGCCTAGGCCTAATTCCAAAGGAAGGACGTCAAACAAAGCAGATTCGAAGATGGTGTCATCTTGGAAATTTATGCGTGCATTCAAGCCAACAATTGTTGGCCTTTCATCTGATTTATTATTTAGAAGGAATTAA 1542 0.4617 MGCALPKPARSLPNPAAPPASNVRGHIPTQQGWPPWLMEVVGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLVSGKIVALKKVRFDDLEGESVKFMAREILVLKKLDHPNVVKLEGLVTSRICSSIYLVFEYMDHDLAGLVAGHGLNFTQPQIKCYMKQLLCGLEHCHSRGVLHRDIKGSNLLIDNQGILKIADFGLAAFYDSKQTRPMTNRVVTLWYRPPELLLGATFYGVGIDLWSAGCIFAELLAGKPIMPARTEVEQLHKIFKLCGSPSEDYWKKYRLQNATLYKPHHQYKRCILQTFKDFPSSSLPLIDTLLAIDPDHRGTTSAALNSQFFNTEPYACEPSSLPMYPPCKELDVKLRVKEATRQKALSGKAVAVDAATRVRARECALAIPESQTNLDRWRVVTNANAKSKSEKFPPPHQDEAVGYPLNASNRGTVLFGASDTSFGSKTSRTHGTSIAAAARPRPNSKGRTSNKADSKMVSSWKFMRAFKPTIVGLSSDLLFRRN 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03293 513 MobiDBLite consensus disorder prediction 450 483 - -
Aip03g03293 513 CDD STKc_CDK9_like 56 340 - -
Aip03g03293 513 SUPERFAMILY Protein kinase-like (PK-like) 49 345 IPR011009 -
Aip03g03293 513 Pfam Protein kinase domain 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g03293 513 ProSiteProfiles Protein kinase domain profile. 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g03293 513 PANTHER CELL DIVISION PROTEIN KINASE 28 486 - -
Aip03g03293 513 SMART serkin_6 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g03293 513 MobiDBLite consensus disorder prediction 1 28 - -
Aip03g03293 513 MobiDBLite consensus disorder prediction 450 464 - -
Aip03g03293 513 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 28 486 - -
Aip03g03293 513 Gene3D Phosphorylase Kinase; domain 1 42 138 - -
Aip03g03293 513 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Aip03g03293 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Aip03g03293 513 Gene3D Transferase(Phosphotransferase) domain 1 139 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03293 Aip-Chr3 108040665 108043089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03293 48 379 Core Cell Cycle Gene Families AT5G10270 50.575 1.01e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip03g03293 Pkinase 2.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03293 K08819 - gmx:100789359 754.592