Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03261 ATGGATTGGAATTTGAAAGCACCACCGTCTTGGGATTTGACAGAAGTGGATGAGGCAACCTTACCAAACATAGAAACAGTGGATGGCTCAACCAGATTTGGTGTTTACAGAACAAAAGGAGGGGAATTCTCTGTTGACTTGAAACTTGGCCAGGTTGGGAATTCTGCAACCGAACCAGTGTTGGTGACTAATTCAAATAAGTCCAACAAAGATGCTGTTGCTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTGTCCAACTCCAAAATGGTAATGCAATCACCTTCCTCAGGGTCATCAAAGAGAGCTAGAGCCATTAACAATGGGACACAGACAGTGTCATGCCTCGTTGATGGGTGCAATTCAGATCTCAGCACTTGCAGAGACTATCACAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTCCTCAGGTCACAATTGCTGGCCACAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGGAGTTTGATGAAGGAAAGAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGGAGAAAGCCACAACCAGAACCAATCACAAGAGGTGGTAGTTTTTTGTCCAGTTTCCAAGGCAGCCAGTTGCTACCCTTCTCAGGTTCGCATGTGTTCCCCTCATCTGGCGTGGTGAATGCTGGGTGGAGTGCAGGACTTGTTACATCCTGCGGAGATGTCAGGCTCCACAGCCACAGCAGCCAGCAACAGCAACAGATGCACATGGTTGATAAACAAGACCTGTTCCTTGGATCCTCACCAACACCCTACAATAACAACAAAGAAGGGAAGCAACAACTTGCATTCTTACAAGTTGATAACCATCACCACCATCATGCTGGTGCTGCTTCTTCCATGTGCCTGAGGAACATGTTCTGTGATAACACCCTAACAAGCTCGGTTCATGACTCTTCCTGTGCTCTCTCTCTTCTGTCATCACCACAGACAACACACAATCCTGGGAATGGATTGAACCAATTGGTGCCGCAGCCTCACACTCATCATACTCATCACTCTTCCCTGATGCAACAATCCTTAGGCCTCAGCCTCCACGATAGCAGCAGCATGGAGTCGGTGGACCCGGTTATGGGCCACAGTGAGACTGAACATTGTTCCTCAATGTATAATATGGATTCTCATGGATCCCATGGGAGTGATCCCCCTCAACTATTCCCCTTTCAGTGGGAATAA 1227 0.4784 MDWNLKAPPSWDLTEVDEATLPNIETVDGSTRFGVYRTKGGEFSVDLKLGQVGNSATEPVLVTNSNKSNKDAVAAGVGVGVGVGVSNSKMVMQSPSSGSSKRARAINNGTQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRGGSFLSSFQGSQLLPFSGSHVFPSSGVVNAGWSAGLVTSCGDVRLHSHSSQQQQQMHMVDKQDLFLGSSPTPYNNNKEGKQQLAFLQVDNHHHHHAGAASSMCLRNMFCDNTLTSSVHDSSCALSLLSSPQTTHNPGNGLNQLVPQPHTHHTHHSSLMQQSLGLSLHDSSSMESVDPVMGHSETEHCSSMYNMDSHGSHGSDPPQLFPFQWE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03261 408 MobiDBLite consensus disorder prediction 179 199 - -
Aip03g03261 408 ProSiteProfiles Zinc finger SBP-type profile. 112 189 IPR004333 GO:0003677
Aip03g03261 408 SUPERFAMILY SBT domain 113 194 IPR036893 GO:0003677|GO:0005634
Aip03g03261 408 Gene3D - 106 176 IPR036893 GO:0003677|GO:0005634
Aip03g03261 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 408 IPR044817 GO:0003677
Aip03g03261 408 Pfam SBP domain 115 188 IPR004333 GO:0003677
Aip03g03261 408 MobiDBLite consensus disorder prediction 326 357 - -
Aip03g03261 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 11 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03261 Aip-Chr3 106494107 106497719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03261 1 408 SBP-box Gene Family AT5G50670 40.749 6.10e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip03g03261 SBP 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03261 - - ahf:112790946 764.992