Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03249 ATGGCGGAACAGACGGAGAAGGCTTTCTTGAAGCAACCCAAGGTTTTCCTCTGCTCGAAGAAATCAGGGAAAGGGAAGAGGCCTGGAAAAGGAGGCAACAGGTTCTGGAAAGGCATTGGTTTAGGGTTTAAGACTCCCAGAGAGGCTATTCAAGGGACTTACATTGACAAGAAATGCCCATTCACTGGCACTGTGTCCATCCGAGGTCGCATTCTTGCCGGTACTTGCCACAGTGCCAAGATGACCAGGACTATCATCGTTCGTCGCAACTATCTTCATTTCATTAAGAAATACCAAAGGTACGAGAAGAGGCACTCAAATATTGCAGCACATATATCTCCATGCTTCCGTGTGAAGGAAGGAGATCATGTTATCATAGGGCAATGCAGGCCATTGTCAAAGACAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGCCGATCCCATTTCCCAGATATTAGATTTAGGAACTCGCGTGTGTGATTTCCTAAATTCGTTTAGGAGGGATTTATATTTTAAGTTCTACAAGAAGCATTAA 603 0.3814 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKGIGLGFKTPREAIQGTYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADPISQILDLGTRVCDFLNSFRRDLYFKFYKKH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03249 200 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Aip03g03249 200 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 137 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip03g03249 200 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 137 - -
Aip03g03249 200 SUPERFAMILY Nucleic acid-binding proteins 68 136 IPR012340 -
Aip03g03249 200 Gene3D - 1 140 - -
Aip03g03249 200 Pfam Ribosomal protein S17 74 136 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip03g03249 200 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip03g03249 200 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip03g03249 200 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aip03g03249 200 TIGRFAM uS17_arch: ribosomal protein uS17 55 137 IPR028333 -
Aip03g03249 200 Coils Coil 136 136 - -
Aip03g03249 200 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03249 Aip-Chr3 106011596 106013213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03249 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 92.647 3.25e-82 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03249 K02949 - mnt:112094153 263.077