Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03246 ATGTGGCGGTCGGCGATTTCAGAACGACGAAGGGCATTCTCGAAGCTTCTATTCGCCTTCACAGTGTCCCGCAACATGGGCGGCGGCCCTCGAACCTTCCCCGGCGGCGTCAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCGCGCCCGTGACAAAGAGAAGAGACTTCTCGAACATGAGAAACAGCTCTATCAGGCTCGCATTCGCTCCCACATACGCTCACACCTCGCACCCGACAACTCAACCGCCACCGCCGCCACCACCCACGGCCCTATCTCCCCCACTGACCACATTAGGGCCCTCGCCAACCGCTTCATGAAGGAAGGAGCTGAAGATCTCTGGAACAACGACGACGGTCCCCTAACCGCTTCTTCTTCTTCTTGTTCTTCTCCCACGCGGCAGCAAGGTTCGATTGAGGCGCCGGTGGATTTGCGGAAGCTGATACAAGAGAAACGGAACCCCAATTCAATGAATTCGAGTGGGAATTTCGGTCAGAGGAGGGGTTACCATTCTGTTTCTGAGGTGAATTCCGGTGTTGGTAGCAGTAAGAAACTTGCGCCTGCTGGGAGGAGAAGATTTTGGAGGAACGATAGTTCTTCTTCGAGTGAGAGTGAATCCGAGGATGAGAACGATTCGAGGGTTAATAATTGGGATGTTAGGAAGATGGGTAGTAGTGCTTCTTTGAGGAAGCATGATTTGAAGAGGGAGAGGAGAGTGATGCCAAAACCATATGATGAAGAGGCTGATTTTGCAGAACAGGTTGAGCTGATTAAGTATGAGATTAACAAGAGGAAGTTGAAACAGAAGGAAATGGAAGAGTACAGGGTTGAGGACCAAGAATCCATCCTAACCCAATCAAGATTTGATGAGTGCGGTATATCGCCATTGACAGTCAAGGCTCTCTCTTCAGCTGGTTATATCCACCTGACCCGGGTGCAAGAGGCAAGCCTTTCTGTTTGCCTTGAGGGTAAGGATGCTCTGGTCAAAGCTAAAACTGGCACGGGAAAAAGTGCAGCATTTTTGCTTCCTGCCATTGAAACAGTTTTGAAAGCTATGAATAGCAAGTCGCGTCAAAATGTGCCACCTATATTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCCAGTCAAATTGCTGCTGAAGCAAAGGCTTTGCTCAAGTATCAAGATGGCATTGGTGTACAAACTCTCGTAGGAGGGGTGCGATTTAAAGTTGACCAAAAGCGTCTTGAATCCGATCCATGCCAGATACTTGTTGCTACCCCTGGTAGGTTGCTAGATCATATTGAGAATAAGTCTGGACTATCTGTGCGATTGATGAGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGATTTCGAAAGGACGTAGAAAAGATTGTTGACTGTGTGCCTCGTCAAAGGCAATCCTTGATGTTTTCTGCAACCATCCCAAAGGAGGTCCGCCGTGTATCTCAACTTGTTTTGAAAAGGGAACATGCATACATTGATACAGTTGGTATGGGTTGTCTGGAAACTCCAGTCAAGCAATTTTTTCTTATTGCTCCACAGGAATCACATTTTCAAATAGTACACCATATTTTAAAGGAGCATGTCATGCAAACACCAGATTATAAGGTTATTATTTTCTGTGTTGCTGGAATGGTAACATCACTTATGTATCAACTTCTCCGTGAAATGAAAATGAACGTCAGGGAGCTACACTCTCGAAAACCCCAACTGTATCGAACTCGCATATCAGATGAGTTTCGGGAATCCAAACAACTGATTCTTGTCTCATCTGATGTTTCATCTCGTGGAATGAATTATCCCAATGTTACTTTAGTCATACAGGTGGGTATTCCTTCTGATCGTGAACAATATATACATCGTCTTGGAAGAACTGGACGGGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAATATTTTTTAGATGAAATCAAGGATCTTCCTCTAGAGAGATTCCCTTTTCCAGATATAGATCCACAGACAAAGCTTAAGATAGAACATTCCATGGGAAAGATAGACAGTGACGTCAAAGAAGCCGCGTATCATGCTTGGCTGGGTTATTACAACTCAATTAGGGAAATTGGGAGGGAGAAGTCCACCATAGCTGAGCTTGCAAACCGGTTTTCTGCATCAATTGGTTTACAGAAGCCTCCTGCGCTCTTTCGAAAGACTGCTTTAAAGATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAA 2265 0.4578 MWRSAISERRRAFSKLLFAFTVSRNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEHEKQLYQARIRSHIRSHLAPDNSTATAATTHGPISPTDHIRALANRFMKEGAEDLWNNDDGPLTASSSSCSSPTRQQGSIEAPVDLRKLIQEKRNPNSMNSSGNFGQRRGYHSVSEVNSGVGSSKKLAPAGRRRFWRNDSSSSSESESEDENDSRVNNWDVRKMGSSASLRKHDLKRERRVMPKPYDEEADFAEQVELIKYEINKRKLKQKEMEEYRVEDQESILTQSRFDECGISPLTVKALSSAGYIHLTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMNSKSRQNVPPIFVLILCPTRELASQIAAEAKALLKYQDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGLSVRLMSLQMLVLDEADHLLDLGFRKDVEKIVDCVPRQRQSLMFSATIPKEVRRVSQLVLKREHAYIDTVGMGCLETPVKQFFLIAPQESHFQIVHHILKEHVMQTPDYKVIIFCVAGMVTSLMYQLLREMKMNVRELHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPNVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLERFPFPDIDPQTKLKIEHSMGKIDSDVKEAAYHAWLGYYNSIREIGREKSTIAELANRFSASIGLQKPPALFRKTALKMGLKDIPGIRIRR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03246 754 PANTHER RNA HELICASE 29 753 - -
Aip03g03246 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 655 IPR027417 -
Aip03g03246 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 533 679 IPR001650 -
Aip03g03246 754 SMART ultradead3 306 517 IPR014001 -
Aip03g03246 754 MobiDBLite consensus disorder prediction 152 181 - -
Aip03g03246 754 CDD SF2_C_DEAD 514 647 - -
Aip03g03246 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 501 IPR014001 -
Aip03g03246 754 MobiDBLite consensus disorder prediction 197 217 - -
Aip03g03246 754 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 753 - -
Aip03g03246 754 MobiDBLite consensus disorder prediction 119 138 - -
Aip03g03246 754 Gene3D - 511 737 IPR027417 -
Aip03g03246 754 MobiDBLite consensus disorder prediction 112 220 - -
Aip03g03246 754 Gene3D - 253 502 IPR027417 -
Aip03g03246 754 Coils Coil 43 63 - -
Aip03g03246 754 SMART helicmild6 557 638 IPR001650 -
Aip03g03246 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 471 IPR027417 -
Aip03g03246 754 Pfam Helicase conserved C-terminal domain 533 637 IPR001650 -
Aip03g03246 754 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 287 315 IPR014014 GO:0003724
Aip03g03246 754 Pfam DEAD/DEAH box helicase 311 489 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03246 Aip-Chr3 105952685 105955998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03246 278 663 Eukaryotic Initiation Factors Gene Family AT3G19760 26.551 2.19e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03246 - - lang:109349967 1142.87