Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03240 ATGCTGGTTATCCTGGTGCTGCTTTTCTTGGGGATGCAGTGTGTGGCATGGCGATGGTGCGAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGGTCTCACACTGCTAAGGAAGTTAAGTGCATTTTTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAACTTATAATTAGAGATTCATTTCACAATTCAGAGAATAGTGGTATTAAGGCTATGAACTACATATACAGAAGTGATGCTGGGATTGATGAGCTAAGTTCGGTAGCATTTGAAATGGTGAGGTTAATTGAGACGGCAACTGTGCCGATTTTCGGGGTTGACACAGGTGGCCTAATCAATGGTTGGAATGTGAAAATTACGGAATTGACAGGTTTGCTGGCAAATGAAGCTATTGGAAAATCACTAGTGAATGAAGTAGCGCATGCAGACTCGCGCAACAATCTTGAAAATATTCAAAGTAAATCACTGCAAGGCTTGGAAGACAAGAATTTTGAGTTGAAATTAAAACACTTTGGGAACAACACAAAATGGAGTTGCCAAGATACCACTTGTGAGAAAGTTGTTCTAGAGAAATTTGTCAAGTTGGAAGATATAGGAAGTATCAATGAAGGCAGTGTGCAGCTAAACATGGAGGAATTTCTTCTTGGGAGTATTCTAGATGCCATTGTGAGTCAAGTGATGCTGTTGGTGAGAGGAAAAAGCTTGCAGCTGTTTCATGAAATTCTGATGAAATGA 768 0.4062 MLVILVLLFLGMQCVAWRWCESVRGISCSGSGLTLLRKLSAFFEVVKSKSSPWEASEINAIHSLQLIIRDSFHNSENSGIKAMNYIYRSDAGIDELSSVAFEMVRLIETATVPIFGVDTGGLINGWNVKITELTGLLANEAIGKSLVNEVAHADSRNNLENIQSKSLQGLEDKNFELKLKHFGNNTKWSCQDTTCEKVVLEKFVKLEDIGSINEGSVQLNMEEFLLGSILDAIVSQVMLLVRGKSLQLFHEILMK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03240 255 Pfam PAS fold 102 180 IPR013767 GO:0006355
Aip03g03240 255 Gene3D PAS domain 94 196 - -
Aip03g03240 255 PANTHER PHYTOCHROME 39 182 - -
Aip03g03240 255 PRINTS Phytochrome signature 121 136 IPR001294 GO:0006355|GO:0009584
Aip03g03240 255 PRINTS Phytochrome signature 102 118 IPR001294 GO:0006355|GO:0009584
Aip03g03240 255 PRINTS Phytochrome signature 35 53 IPR001294 GO:0006355|GO:0009584
Aip03g03240 255 TIGRFAM sensory_box: PAS domain S-box protein 106 172 IPR000014 -
Aip03g03240 255 SUPERFAMILY PYP-like sensor domain (PAS domain) 105 188 IPR035965 -
Aip03g03240 255 ProSiteProfiles PAS repeat profile. 99 170 IPR000014 -
Aip03g03240 255 CDD PAS 110 181 IPR000014 -
Aip03g03240 255 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03240 Aip-Chr3 105662279 105664568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03240 194 252 Histidine Kinase Gene Family AT2G18790 47.458 1.25e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03240 K12123 - gmx:100808192 214.157