Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03214 ATGGATGGGAGAGAAGCCATGGCATTTACTAGTGGGTCTTCTTCATTTTACGTGCATAGAGAGAGTGGAGGGTTACAAGGACCTCCAGGATTCAGAGCTTTGTCAAACACTGCCGTTCAATCTCAGTCAAATGCAAAGGGTGGCGGAGGCGGCTCTGTTGGTTCTAATTCCTCATTTGCATTACGGGTTCAACCTCAAGCACAGGCTCGTGCCGGTTTTAGTCATGGCATTGGCATTGGTGCCTCATCTTCTGGTGGTGGAGTGCCTCCTTCTTCCTCAGGTGAGCCTGTGAAGAAGAAGAGAGGGAGACCCCGCAAGTATGGCCCAGAAGGACCAGGACCAGTTTCTTTGAGACTTTCATCAATGTCTGCCCCCGCTTGTTGGAATGCTGGTTCAACCTCTGATTCCCAGAAAAGGGGTAGAGGACGCCCTCCGGGATCTGGAAGGAAACAACAGCTGGCTACTCTTGGTGAATGGATGAATAGTTCTGCAGGGCTGGCTTTTTCACCTCATGTAATCTCCATTGGAGTAGGGGAGGACATTGTAGCAAAGCTATTGTCGATATCACAGCAGAGACCACGGGCTCTCTGCATCATGTCGGGTACTGGGATAGTTTCTCTAGTTACTCTCAGGCAGCCTGCTTCTACTAACACCAGTGTCACGATTGAGGGCCGATTCCAAATATTGTGTTTATCTGGTTCTTACTTGGTTCCTGAAGATGGTGGACCATCCAATAGAACAGGTGGCATAAGTGTTTCCCTTTCTAGCTCCGACGGCCGTGTTATTGGTGGTGGTGTTGCAGTGCTTATTGCTGGAAGCCCAGTGCAGGTGGTAGTGTGCAGTTTTGTATATAGTGGTAGCGCTAAGACCAAGCCCACGCAAGCTACCCTCATGAAAGAAGAGAGTTCCGAGCCTCAGCGCAATGACAAGTTAGCTTCTTTGGCCAGTGCTCCGCATAGTCAAAACTACATCCCTTCTGCTACAGGCATTTGGCCTGGATCACGACCTGCAGATCTCAAGAGCGCGCACGGACACACTGGCATTGACTTGACACGTGGATGA 1062 0.5028 MDGREAMAFTSGSSSFYVHRESGGLQGPPGFRALSNTAVQSQSNAKGGGGGSVGSNSSFALRVQPQAQARAGFSHGIGIGASSSGGGVPPSSSGEPVKKKRGRPRKYGPEGPGPVSLRLSSMSAPACWNAGSTSDSQKRGRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVISIGVGEDIVAKLLSISQQRPRALCIMSGTGIVSLVTLRQPASTNTSVTIEGRFQILCLSGSYLVPEDGGPSNRTGGISVSLSSSDGRVIGGGVAVLIAGSPVQVVVCSFVYSGSAKTKPTQATLMKEESSEPQRNDKLASLASAPHSQNYIPSATGIWPGSRPADLKSAHGHTGIDLTRG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03214 353 MobiDBLite consensus disorder prediction 325 353 - -
Aip03g03214 353 CDD DUF296 170 282 IPR005175 -
Aip03g03214 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 284 - -
Aip03g03214 353 MobiDBLite consensus disorder prediction 122 140 - -
Aip03g03214 353 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 8 353 - -
Aip03g03214 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 353 IPR039605 GO:0003680
Aip03g03214 353 Gene3D - 170 302 - -
Aip03g03214 353 ProSiteProfiles PPC domain profile profile. 162 303 IPR005175 -
Aip03g03214 353 MobiDBLite consensus disorder prediction 75 151 - -
Aip03g03214 353 MobiDBLite consensus disorder prediction 33 61 - -
Aip03g03214 353 MobiDBLite consensus disorder prediction 1 61 - -
Aip03g03214 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
Aip03g03214 353 SMART AT_hook_2 98 110 IPR017956 GO:0003677
Aip03g03214 353 SMART AT_hook_2 138 150 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03214 Aip-Chr3 104894448 104896260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03214 1 353 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.328 1.91e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03214 - - gmx:100798706 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03214 03 104894448 104896260 Aip03g03214 03 104894448 104896260 ECH
Aip05g01067 05 15226358 15229578 Aip03g03214 03 104894448 104896260 PCT