Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03195 ATGTTGACGGAGAACTTCAAAGAACAGCTTGCTTTGTCTGTGAGAAGCATCCAGTGGAGCTATGCAATATTCTGGTCTACTTCATCTACCCAACCCGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTGGAACTCAATTCTGATCAGATAGGGTTGCAGCGGAGTGAGCAGCTTCGAGAGTTATACAAGTCCCTCAAAACTGTAGAAGCCAGCCCTCAAACAAAAAGGCCTTCAGCAGCACTGTCTCCAGAGGATCTCACAGATACAGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAAGGCTCTTGCAAAAGGTGAACCAATTTGGCTGTGTGATGCTCCTTCTAGTGATTGTAGAGATTTTAGTCGCTGTCTTCTGGCTAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCTTTTATGGATGGGGTCATTGAGCTGGGTACAACTGATCATGTCTCAGAAGATCTCAGTCTCATTCAACAGATCAGAACTTCCTTCTTGGATATTCTTGATGTCGGTGTTCATAATGTACATGGAGCATTTAATGTGAAACAATCTCAAGAAGTAGGAGGTGCATTAATCAGCATAACTTCTCCTAATAACAGTTCAAATGCATTTCAAGCCAATCAACCACCAGATGAAACACTCATGGTTGAAAGGATAAATAATGGCACCTCTCAAGTCCAAAGTTGGCAAATTATGGATGATGAATTGAGCAATGCTGTTCATAATTCTAGTGACTGCGTATCTCAAACTCTTCACAGTCCTGAGAACGTTGCTTCCCTTCCAAAGGGTGAAAACCTCACTGATAGTGCCAAAGACCTTCAAAAGTGCAATAACTCAAAAATGACATTAGTTGATCCTCGAAGCGATGATTGGCATTATCAGATGGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTAATCATGGGGATGCATTTTCAAAATTTTCATCAGGAATCAAGCTTTTCAAGTTGGAAGAAAGCTGGGTCAGTGAGCTACCAAAGGCCAAGAACTGGAGGAAGCTCACAAGCTTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCACTTGGATGGGATACTTGAGTATCAAGAAGAGAATGACTTTAAAGAAGCAGTGAGAACAGAAGCTGATGAAAATGGCATGAACCATGTTTTGTCAGAGAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTACTAAGGATGACAAAGTTTCGATACTAGATGATGCAATAGAATACCTTAGAAAGCTTGAAAAAAGGATAAAAGAGTTGGAAGCTCATAAGGATCTAACAGACAGAGAGGCTAGAACTAAAAGATCACCTCAAGATATGGTGGAGAGGACTTCTGATAATTATTTTAACAAAACGGATAATGGCACTAAATCGATGGCGAAAAAGAGGAAGTCTCGTGACATAGATGACACCAGGCCAGAGATTAATTCAGAATCTTTACTAAAAGGAAGTTCTACTAATGATGTTGCTGTTAACATCAATGAGAANTTATGGAAGCAGTTAGCAGTCTCAGATTGA 1641 0.4059 MLTENFKEQLALSVRSIQWSYAIFWSTSSTQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELYKSLKTVEASPQTKRPSAALSPEDLTDTEWYYLVCMSFVFNIGQGLPGKALAKGEPIWLCDAPSSDCRDFSRCLLAKSASIQTVVCFPFMDGVIELGTTDHVSEDLSLIQQIRTSFLDILDVGVHNVHGAFNVKQSQEVGGALISITSPNNSSNAFQANQPPDETLMVERINNGTSQVQSWQIMDDELSNAVHNSSDCVSQTLHSPENVASLPKGENLTDSAKDLQKCNNSKMTLVDPRSDDWHYQMVLSTLLKSSDQLIMGMHFQNFHQESSFSSWKKAGSVSYQRPRTGGSSQALLKKVLFEVPRMHLDGILEYQEENDFKEAVRTEADENGMNHVLSERRRRAKLNERFLTLRSMVPSITKDDKVSILDDAIEYLRKLEKRIKELEAHKDLTDREARTKRSPQDMVERTSDNYFNKTDNGTKSMAKKRKSRDIDDTRPEINSESLLKGSSTNDVAVNINEXLWKQLAVSD 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03195 546 PANTHER TRANSCRIPTION FACTOR EGL1 5 536 - -
Aip03g03195 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 408 471 IPR036638 GO:0046983
Aip03g03195 546 MobiDBLite consensus disorder prediction 497 517 - -
Aip03g03195 546 Coils Coil 444 471 - -
Aip03g03195 546 PANTHER TRANSCRIPTION FACTOR TT8 5 536 - -
Aip03g03195 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 405 454 IPR011598 GO:0046983
Aip03g03195 546 SMART finulus 411 460 IPR011598 GO:0046983
Aip03g03195 546 Gene3D - 397 472 IPR036638 GO:0046983
Aip03g03195 546 Gene3D - 101 171 IPR029016 -
Aip03g03195 546 MobiDBLite consensus disorder prediction 469 522 - -
Aip03g03195 546 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 189 IPR025610 -
Aip03g03195 546 Pfam Helix-loop-helix DNA-binding domain 409 455 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03195 Aip-Chr3 103664766 103668320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03195 2 534 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 47.826 2.06e-163 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g03195 bHLH-MYC_N 1.6e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03195 - - ahf:112732736 1063.52