Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03170 ATGGCAGGATGGTCAACTTGGTCAAATGGGTCGTCCTTAGATTTCAATGAAGTTGAGATATTTGATGTATGTAATGGTAATGACTGTAGGAATCTAAACGATCACAGTGATAATGATGACCATGACAAAGTTAAAACCTTGTTTGATGAAGTTTTTCCGGTTTATCTAAAGGAGAGTTGTTCTCGTGGCATTGTTCGGCCTATGCCGGTTTTGCTGGGTGATGGACAAGCAGTGGATTTGTACAAACTCTTCTCTCTTGTGAAGGAAATAGGTGGATATGATTTTGTGTCAAGAAAAGGATTGTGGGGTTATGTGTCAAAGGAAATGGGTTTGAACCACCAAGTTTTGGCATCGATGAAATTAATTTTTGATAAGTATCTGAATGAGTTTGAAGAATGGCTCAGGAAGACTTTCAAAGAGAAGAGTTTCAGAAACGAAAATCATGGGCGTGATTGGGGTTTTAAGTCATTGCTGTTAGAGCTAGAGAAAGAATTGAGAGGCCTATTATCTCTAAACGTAAAGGATAAAGATGACGGGCTTGCAAAGATGGAATCAAATGGAATAAAAGAATATATTGATTTGGTTAACCACAAGGAAGATCCAAATGTATTGGACACCAAAACTCAGAAAATAAATACATATGAGGATGTCCAACACTCCCATGTTGATGATGACGAAAAAGCTTGTAATGGTGTTAAGGAATACTCTGTCACCTTGAACGCGTCAATTGCTGAGAATGGAGTTGGCTCTCGCAAGCGCAAACGGGAACCATTATCTGGAATGCTGAACTGGGTTAGGCAAGTTGCAAAGCATCCCTTTGTTCCTTTACAGCAACCATTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCAATGACTTTTTCATCCAGTTACTGAGGGCAAGAGAGGCTCGGTTGGTGAAACCATGCGCACAACCTAACAATGAAACACCTTCTTCACAGAAGCAGAAGATGTGCCCTGATATGTACGAGGATCACGTTGCACCTCGTTACCATTCTTCTCCAAGACTGAGATGTAGTGAAAGGCTGCCAGCACATGTTAAATCTCGCACATGCTCTTGTTGCAATTCAGGTTCTGCCAATGGGAAAAAATTAACAAGTTCAGTCAATACAGAGGCCGAAAATTGTTTCTTGCATAAAACAACTGCAACAGTAGATTCATCGACTGCAAGGACAGTGATTGAACAGTCTGCAAATGATTTCCAGGAAAAGCATGTTTCTGTGGGTCCTCTTTATCAAGCAGATGTCCCAGAATGGACAGGTGAAGTTTGTGAGAGTGACTCAAAGTGGTTAGGCACTCGAGTATGGCCTCAGAAACATGACTTAGATCTTCCAAGTGAAACGGATCTTGTAGGGAGAGGAAGACAAGGCAATTGTGAGTGCCATTTTAAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCTGAAAGAAGGATGAAATTGAGGCGTGACCTGGGTTCTGCATTTTATCATTGGGGGTTCGATCGCATGGGTGAGGAAATTTCACTTCAATGGACAATCGAAGATGAAAAGAGATTCAAGGATTTGATGAGTCAGAGTTTTCCATCTCAAAACAAGTGTTTCTGGAGCAACAAATCAAGATACTTTCCAGACAAGACAAGAAGGGACTTGGTGAGTTATTACTTTAATATGTATCTTATTCAACTAAGAAGCTATCAGAACCGTGTGACTCCAAATAGTGTTGATAGTGATGAAGATGAAGTGGAGTTCGGATCTTTTAGCGAAGGTTTTGGGATGGGAGCTCTCAAAATCCCAGTGATTCACACACACTCACTCTGTACCCTGTCTTCTCCAAGCAAACGTCGAGACATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAATGATGAACGATGGCATGCAAGAGTTCTTTGTAGAATTTCGCGGACCAAAAGACAGTCCCTATCAAGATGGTGTGTGGAAGATTAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCCCCCTCTATTGGTTTTGTAAACAAAATTTACCACCCCAATGTTGATGAAATGTCTGGATCAGTTTGCTTAGATGTTATTAACCAGACCTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTGTACCCGAACGCATCAGATCCGTTGAATGGTGATGCTGCTGCCTTAATGATGCGAGATCATGCAGCATATGAACAAAAAGTCAAAGAATATTGTGAAAAATATGCCAAGCCAGAAGATATTGGAGCTACTCAGGAAGAAAATTCGAGTGACGATGAGCTAAGTGAAGAAGAATATGATGCCTCTAGTGATGACGCCATTGCGGGGGAACCTGATCCTTAG 2379 0.4107 MAGWSTWSNGSSLDFNEVEIFDVCNGNDCRNLNDHSDNDDHDKVKTLFDEVFPVYLKESCSRGIVRPMPVLLGDGQAVDLYKLFSLVKEIGGYDFVSRKGLWGYVSKEMGLNHQVLASMKLIFDKYLNEFEEWLRKTFKEKSFRNENHGRDWGFKSLLLELEKELRGLLSLNVKDKDDGLAKMESNGIKEYIDLVNHKEDPNVLDTKTQKINTYEDVQHSHVDDDEKACNGVKEYSVTLNASIAENGVGSRKRKREPLSGMLNWVRQVAKHPFVPLQQPLPKPSKWKEYKGNDFFIQLLRAREARLVKPCAQPNNETPSSQKQKMCPDMYEDHVAPRYHSSPRLRCSERLPAHVKSRTCSCCNSGSANGKKLTSSVNTEAENCFLHKTTATVDSSTARTVIEQSANDFQEKHVSVGPLYQADVPEWTGEVCESDSKWLGTRVWPQKHDLDLPSETDLVGRGRQGNCECHFKGSVECVRFHIAERRMKLRRDLGSAFYHWGFDRMGEEISLQWTIEDEKRFKDLMSQSFPSQNKCFWSNKSRYFPDKTRRDLVSYYFNMYLIQLRSYQNRVTPNSVDSDEDEVEFGSFSEGFGMGALKIPVIHTHSLCTLSSPSKRRDMDLMKLMMSDYKVEMMNDGMQEFFVEFRGPKDSPYQDGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMMRDHAAYEQKVKEYCEKYAKPEDIGATQEENSSDDELSEEEYDASSDDAIAGEPDP 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03170 792 Gene3D - 28 145 IPR036431 GO:0003677
Aip03g03170 792 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 608 - -
Aip03g03170 792 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 608 - -
Aip03g03170 792 SMART bright_3 43 136 IPR001606 GO:0003677
Aip03g03170 792 SMART ubc_7 612 756 - -
Aip03g03170 792 MobiDBLite consensus disorder prediction 764 792 - -
Aip03g03170 792 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677
Aip03g03170 792 SUPERFAMILY UBC-like 613 756 IPR016135 -
Aip03g03170 792 SMART ARID_2 39 131 - -
Aip03g03170 792 Pfam Ubiquitin-conjugating enzyme 619 750 IPR000608 -
Aip03g03170 792 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 681 697 IPR023313 -
Aip03g03170 792 Gene3D Ubiquitin Conjugating Enzyme 604 768 IPR016135 -
Aip03g03170 792 MobiDBLite consensus disorder prediction 757 792 - -
Aip03g03170 792 Pfam ARID/BRIGHT DNA binding domain 56 131 IPR001606 GO:0003677
Aip03g03170 792 SUPERFAMILY ARID-like 47 136 IPR036431 GO:0003677
Aip03g03170 792 CDD UBCc 618 751 IPR000608 -
Aip03g03170 792 CDD ARID 45 131 - -
Aip03g03170 792 ProSiteProfiles ELM2 domain profile. 411 457 IPR000949 -
Aip03g03170 792 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 608 756 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03170 Aip-Chr3 102347604 102354138 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip03g03170 UQ_con 1.9e-37 CL0208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03170 - - gmx:100819320 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03170 03 102347604 102354138 Aip03g03170 03 102347604 102354138 ECH
Aip03g03170 03 102347604 102354138 Aip09g00276 09 2553928 2556812 ECH
Aip03g03170 03 102347604 102354138 Aip04g02791 04 118907731 118909714 ECH