Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03162 ATGTCTTCTGGTCTGTATTCATTTGAAACCACTTTCCAAGCACATTCAAGCTCAGACATGGTCACTGCTGATGGAGGAGACCTTGCTTTTCTCACTGACCCTTTTCCTTTCTTCGAAAACAGCACTACTAATGATATTGGTCAACACTGTTCGAGCAACCAAAGCATGTTCGATGAGGCTCTTTCTTCTTCTTCTGTTGACCCTTTTTCATCTTGCTTCTTTTCTTTCTCTCCTCCAAGTACGCACTTAGAAAACCTTAGCCTTCAGGCCAACAACAAGAACAACCGTGTTGATCCCAATTTGGAGAGTGACTTTGCAAGTTTCTCATCGGGTTTTGATGTGACACAAGTAGTGAAGAGCGAGGAGTGCCAAATCGCTGTTGAATTTGATTATGGATATAATAATCATAATCACCAACACTTTTTTCCCCACAGTTATAGCGGTGCTGAGAATGTGGCAAAATACATGCAGAGGAGTTTCAGCAGCAACTCCTTTCATGGCAAACCTGGGAATTTTCTGTTCCAAAATAATCACTCTGACACACTAAACAACAATAATAATAATAACAACATGGAATCTCCAAGTTTTCAAAGACATGATATGAGTTCACCTGAAAACAGTGCCTTCAATGGACAAATGAGGAGGGTGTGCAGCACTGGAGATCTGCAGAAGTGTCAAAGGGAAGGATCATTGTTGGAGGAACCGAATTTCAAAGTAGGGCGTTATAGTGCTGAAGAAAGAAAAGAAAGAATATCAAAATATAGAGCCAAGAGAAGCCAGAGGAACTTCAACAAAACCATCAAGAAATGTATAACACTAGCCGACAATCGACCGCGCATACGTGGCAGATTCGCACGCAACGACGAGGAGCGCGACATTATTCCTATTCCAAATCACAACGCTCCATGTTCAGCCCGAGATGATGAAGACGAAGAAGTCGATTTCTGGATTGAAGGGTTGCAGTTGCATGAAGAGCAGGAGGATGTAACAGTCAACGCTTATGGACCTAATCAGTTTCAGTACTTTCGTTTCTAA 1035 0.4203 MSSGLYSFETTFQAHSSSDMVTADGGDLAFLTDPFPFFENSTTNDIGQHCSSNQSMFDEALSSSSVDPFSSCFFSFSPPSTHLENLSLQANNKNNRVDPNLESDFASFSSGFDVTQVVKSEECQIAVEFDYGYNNHNHQHFFPHSYSGAENVAKYMQRSFSSNSFHGKPGNFLFQNNHSDTLNNNNNNNNMESPSFQRHDMSSPENSAFNGQMRRVCSTGDLQKCQREGSLLEEPNFKVGRYSAEERKERISKYRAKRSQRNFNKTIKKCITLADNRPRIRGRFARNDEERDIIPIPNHNAPCSARDDEDEEVDFWIEGLQLHEEQEDVTVNAYGPNQFQYFRF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03162 344 Pfam CCT motif 247 287 IPR010402 GO:0005515
Aip03g03162 344 ProSiteProfiles CCT domain profile. 247 287 IPR010402 GO:0005515
Aip03g03162 344 PANTHER CCT MOTIF FAMILY PROTEIN 24 341 - -
Aip03g03162 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 341 IPR045281 GO:0009909
Aip03g03162 344 MobiDBLite consensus disorder prediction 186 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03162 Aip-Chr3 102001037 102002432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03162 243 289 C2C2-CO-like Transcription Factor Family AT5G57660 44.898 6.89e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g03162 CCT 1.4e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03162 - - adu:107479916 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03162 03 102001037 102002432 Aip03g03162 03 102001037 102002432 ECH
Aip05g01080 05 15523420 15525152 Aip03g03162 03 102001037 102002432 PCT