Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03161 ATGGGATTCCCAGTGGGTTACACAGAGCTTCTGTTCCCAAAGCCTGTTCTTCAAATCCTCTCCGTATTGGGTTACATAAGAAGGTTGATTTTCACCTTCTTCAGCTACACGGGCCTCCCCAACTTCCTCGAACCCGATGACACCGATAACACAATGCCCCAATTCCACCCCGTGTCGGAGCTCCTCATCAGAGAGATCCTTCCCGTGGTGAAGTTCTCGGAGCTGGTGGAGCCGCCTGAGAGGTGTGCCGTGTGCCTCACGGACTTCGAGCAGGAGGATGAGATCCGACGGCTGGTGAACTGCACGCACGTGTTCCACCGGGGTTGTGTGGACCGTTGGATGGGTTACGATCAGAGCACGTGCCCTCTGTGCCGGACACCCTTCATTCCAGATGATTTCTTCAATCACGGCCTCTGGGCTGCTTCTGCCATTCCCGAATTTCATGCTTAG 450 0.5489 MGFPVGYTELLFPKPVLQILSVLGYIRRLIFTFFSYTGLPNFLEPDDTDNTMPQFHPVSELLIREILPVVKFSELVEPPERCAVCLTDFEQEDEIRRLVNCTHVFHRGCVDRWMGYDQSTCPLCRTPFIPDDFFNHGLWAASAIPEFHA 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03161 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 131 IPR013083 -
Aip03g03161 149 Pfam Ring finger domain 81 125 IPR001841 -
Aip03g03161 149 ProSiteProfiles Zinc finger RING-type profile. 82 125 IPR001841 -
Aip03g03161 149 SMART ring_2 82 124 IPR001841 -
Aip03g03161 149 PANTHER BRH1 RING FINGER PROTEIN 1 148 - -
Aip03g03161 149 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 148 - -
Aip03g03161 149 SUPERFAMILY RING/U-box 62 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03161 Aip-Chr3 101966439 101966980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03161 1 143 C3H Transcription Factor Family AT1G63840 55.844 4.12e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03161 K16281 - jre:109014495 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03161 03 101966439 101966980 Aip03g03161 03 101966439 101966980 ECH
Aip05g01082 05 15553467 15554288 Aip03g03161 03 101966439 101966980 PCT