Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03061 ATGCTAAACATATCCCAGGAAAAATATGACAACACAGTTAAAGAATTCACAAAAGCATTAGATCTGAATCCAGTGTACATTAAAGCTTTAGTAAGAAGAGGAGCTGCTCATGAAAAGCTTGAACATTTTGAAGAAACCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGTTAGGAAGACCATCACGCGACTTGAGCTGCTTGCTGCAGAAAAGCAAGAAATGATGAAGAGATGA 252 0.3611 MLNISQEKYDNTVKEFTKALDLNPVYIKALVRRGAAHEKLEHFEETIADMKKILEIDPSNDQVRKTITRLELLAAEKQEMMKR 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03061 83 ProSiteProfiles TPR repeat profile. 27 60 IPR019734 GO:0005515
Aip03g03061 83 SUPERFAMILY TPR-like 3 81 IPR011990 GO:0005515
Aip03g03061 83 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 3 82 - -
Aip03g03061 83 Pfam Tetratricopeptide repeat 28 60 IPR019734 GO:0005515
Aip03g03061 83 Gene3D Tetratricopeptide repeat domain 1 83 IPR011990 GO:0005515
Aip03g03061 83 Coils Coil 67 83 - -
Aip03g03061 83 SMART tpr_5 27 60 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03061 Aip-Chr3 94069793 94070361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03061 9 70 Calmodulin-binding Proteins AT3G25230 40.323 8.68e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03061 K24926 - aip:110270710 142.51