Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03048 ATGGAAATAACGACGGATGGAAGAAACACATCATCAAGGGAGGTAGTTGATGATATTGGGTGGTGTTTATCAGATCTGATATTATCATCATCGGGTTCAAACACGTTGGACTCAATCTTCTCTCACTGCCCTCCCGCTAATCCCACAGTGGCCTTCCAGCAACCGTTCGGGTGCTCCTCCGTCTACACCCGCCAAAGAAACATCCTGCAGAAGTTGTACGATCAAAGCCGAGTGACCACGAAGCGTTCTTGTTTTGTTGTTCCCCCTCCCTCGCCATGGAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGAGCTGGGGAAAATGGGTGGCTGAGATTCGACTCCCTCAGAACAGAATGAGGGTCTGGCTTGGCACTTACGATACTCCGGAAGCCGCTGCTTATGCTTATGACCGCGCTGCTTATAAGCTTCGTGGCGAGTACGCGCGCTTGAATTTCCCTGCTTTGAAGGAACCCTCCAGTGATGTCCTCTTGTCTTCCCAAGATTCCATCAAGTTTAACTCTCTCAACTGCTACGTGGATGCTAAGATTCGTGCCATATGCCAAAGGCTCAAGCGAGAGAGGAGCATGCGCAAGAATAATAACAACACTACCACTAGTCCTCTCGAGAATCCACGGATGTTCTTGTCTAGTTCAAGCGCCGAGTTTGTTGAAGCAGCTGCTGGCGGTTTCATTTCAGTAGAGGACGGTATTGTTTTAGCAGAGTGTCCCCCAACAATGACAACAGCAGCAGATACTGAATCATCCCATGATTTCCAAAACTGTTCCTTAGCAAGACTGCCCTCCTTCGATCCTGACTTGATTTGGGAAGTTCTGCCTAACTAA 846 0.4894 MEITTDGRNTSSREVVDDIGWCLSDLILSSSGSNTLDSIFSHCPPANPTVAFQQPFGCSSVYTRQRNILQKLYDQSRVTTKRSCFVVPPPSPWKKKLYRGVRQRSWGKWVAEIRLPQNRMRVWLGTYDTPEAAAYAYDRAAYKLRGEYARLNFPALKEPSSDVLLSSQDSIKFNSLNCYVDAKIRAICQRLKRERSMRKNNNNTTTSPLENPRMFLSSSSAEFVEAAAGGFISVEDGIVLAECPPTMTTAADTESSHDFQNCSLARLPSFDPDLIWEVLPN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03048 281 Gene3D AP2/ERF domain 97 155 IPR036955 GO:0003700|GO:0006355
Aip03g03048 281 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Aip03g03048 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 280 - -
Aip03g03048 281 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Aip03g03048 281 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Aip03g03048 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 280 - -
Aip03g03048 281 CDD AP2 96 156 IPR001471 GO:0003700|GO:0006355
Aip03g03048 281 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Aip03g03048 281 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Aip03g03048 281 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03048 Aip-Chr3 93673579 93674764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03048 1 281 AP2-EREBP Transcription Factor Family AT1G64380 41.279 2.54e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g03048 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03048 - - aip:107634547 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03048 03 93673579 93674764 Aip03g03048 03 93673579 93674764 ECH