Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03036 ATGGTACAACCAATACCCTGTTTGAACTCAGGGTTTAATAGTAGTAGCAAATCTTCGGTGGTGGCGATCTTGTCGAATCCGCCGTTTCCAACGCCGTGGACGTCGCCGTGCCACGTCATATCGTGGGCTATGATCCCGGTTGCCGGTTTTCCGTGGCCGTTTTGGACGGATTATTATTCTGACATAAAGTTGGAATGGGATAACCCAAATTGCGGAAGTTGCGAGGCACGTGGAGGACGGTGTGGGTTCGTTGGCCCAACGCTCCGGGACACTGCTTTTCATGTTGGTTGTTACGATCTTCCCACTCAACTTCAAGGTCTTTCAAAGAAAACCAAGTACGGTTTAGGTATGGGCCTAGGAATACCTGGAGCCTTGTGTATTATTGTGCTTGCATATTTGTTCTACGCCAAGATGAAGACACATGAGCAACAGAGGCTATCAAGAAGTGATTTTTCGACCATAATTTTACCGCGTCTTCCTGTTCAAATCATGGGATTGGATGCTGCTAGCATAGAAAAATACCCCAAAACCCTGCTTGGTGAAAGTGGGCGATTGCCTAAGCCTAATGACAATCTTTGTTCCATATGTCTCTGTGAGTACCAGCCCAAGGAGACCTTGAGGACCATACCTGAATGCAATCACTATTTTCATGCCAATTGCATAGATGGATGGCTCAAGATGAATGCTACTTGTCCTCTTTGTCGCAATTTACCTGAAAGATCTGTTGCATCATTAACCCCGTCTATACCTGCATCTCCCACTTATTAG 768 0.4622 MVQPIPCLNSGFNSSSKSSVVAILSNPPFPTPWTSPCHVISWAMIPVAGFPWPFWTDYYSDIKLEWDNPNCGSCEARGGRCGFVGPTLRDTAFHVGCYDLPTQLQGLSKKTKYGLGMGLGIPGALCIIVLAYLFYAKMKTHEQQRLSRSDFSTIILPRLPVQIMGLDAASIEKYPKTLLGESGRLPKPNDNLCSICLCEYQPKETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSVASLTPSIPASPTY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03036 255 Pfam Ring finger domain 192 235 IPR001841 -
Aip03g03036 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 239 IPR013083 -
Aip03g03036 255 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 252 - -
Aip03g03036 255 ProSiteProfiles Zinc finger RING-type profile. 193 235 IPR001841 -
Aip03g03036 255 CDD RING-H2_PA-TM-RING 193 235 - -
Aip03g03036 255 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 4 252 - -
Aip03g03036 255 SMART ring_2 193 234 IPR001841 -
Aip03g03036 255 SUPERFAMILY RING/U-box 187 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03036 Aip-Chr3 93079666 93081186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03036 5 236 C3H Transcription Factor Family AT1G28040 34.583 4.89e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03036 - - adu:107479734 521.546