Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03021 ATGGAAATGGAATTGGAAGCTGAAGCTGAAGCTGATTTTATGACGAATGACATGCTCACACTCCCACACGATCCCTTTGATCCCAACCACATCCATGATGATGATAATTTGGCTATTGAAGGCGAAAGATGTGGAATATGCATGGATATCGTCATTGATAGGGGAGTTCTCGATTGCTGTCAGCATTGGTTCTGTTTTGTATGCATTGATAACTGGGCTACAATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCAGTTGATCACTTGTGTACCAGTTTATGATACCATTGGAGGCAATAAAGTTGAAGATGACTCATTCTTCAGAGATGACGAATGGTCCATTGAAGGGAAGAACAATACATTATCGTTTCCCTCCTACTACATTGATGAAAATGCAGTTACTTGTTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGAAACTATTGAAGGAGATTCTGATCTTGATACATCAATTGCATGTGATTCATGTGATACATGGTATCATGCCTTCTGTGTGGGATTTGATACAGAAGGTACATCTGAAAGTACATGGTTATGTCCAAGATGCGTGGTCGGTGAAGTTTCTAAAGGAAGAGACACTGATTCAATGGAGAGCACGATGGTAGAATGTAACCCAGAGCATATTAACAATCAATGTCAGGCTGAGGATTCCTTTTCAAGAAAAGTTTGTGTGTCTGTTGCTGATGCGGGAGAGACAGCTGTTGTTGTTTCAATGGTTGATGGACATAAATGGGTTCCATCAGCAAGCGAGAAAGGCCTATTGCCTCTTGAACTTGGCAGGGATCAATTGACTGAATCATGTATATTAGATTCTGACACAACTAATCAGCAGAAAGCAATGGAGAAGAAGATTATGTCACCAATTGTGAAGGAACAAGAGCTGGAGTTGTGCTTATCACACAATGTATCTGGTAGCCTAAGTTCTAAATCCTTGGAGCATAATGATCCAAAGGAAAGTGCTCATGGAGCAAGGAGTGGACCAAGTAACCTTGATGAAACCAAGTTAGCTGATGAGTCCCATGTCAAAACTAGTCCTTCTAGAAATGAATCTGATATGGGTCTTCATCTTGGTTTATCAGTGGGCTCTTTCCTATCAGTTGATAATGTGGACAAGGATGGAATAAAAGATCACACAACTGGTGTCAAGCACCTGAGTCCAGATGAATGTTCTATGGAAGGAGATGTAATTGAAAACGATGTTAAGAAGGATAATACTAGTGTAACTGCTGGGAAGAGAAAGCATGTTGATCACAGCAATGATGAAGGTCATTTCAAAGTTGATGGGGATGTGAAGCCTGAACTTCCAATTGAAGTGTCTCGAAAGAAAATTAGAGCTGCTGGTGGTCAAATGACTAGTATTAATAACTCAGCTGATGCCCAGCTTTCAGACAATGGTCAAAAGAGCTCTGCTTTGAACCATTCTGCATCCAAGGAGGTTGTCAGACCAACTATAATGAATATAGTTAAAGGTACAAACCGTAGGCTTTCCAAGGGACCTACTGGCACTAATTCATCCGACAATGTGTCTAGAAAGGATGAAAATATGGCTGGATTGAGGGTAAAAAAGATCATGAAGAGAGTTGCTGATGATGGAGAATCATCCTTGATAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGAAAATATTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTATAGCTGGACCCAAAACTGAACCTGTAAATAAGTTAACCCCTTCAGCTTTAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAACGGTACGTGAGCATCTTACAAAGAAAATTTTTGGGACTTCAAATGGAAAAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGGTGCATGAGGGCTACAAGGCCTGAAAAAATTGAAACTTTAAAATCAGTTCTAGATCTACTAAGAAAAAATTCAGAGTCAACCCAGGGTCCTGAATGTCAGGCCAAGGATACTATTCTTTCCAGGTTGTATCTAGCAGATACATCTGTTTTCCCACGGAAAGATGATGTCAAGCCCCTCTCTGTACTTAAAACTGATGCTAGCTCAGAGCAGACTAAACAAAATAACCCGTCAGGAACAGATATAAAAAATCTTTCATGCAATGCCAGAGTTTGTTCATCTGAAACAAAAGTAGATAAGATTATACATGATTCAGCTGGTGATAATTCAGCTTCTCGTAAGACATCAGTTTCTTCTTCAGCTGGTGCCAAAGTTAATGCAAAAGAATTAGGACTTAAATCAGATTCTACGAAGAGTGATAAAAAGAAATGGGCCTTAGAGTTTCTTGCTAAGAAAACAGCTGCTGAGAGCAAAAGGACGGCAAATGGAAGTCAAGAAGACAATACAATTTTTAAAGATAAATTTCCTTTGCTTGCCCAACTACCGGCTGATATGAGACCAGTACTGGGACCTTCTTGTCACAATAAAATTCCAATATCAGTGAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTGTTGAGGAACACAAATCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATCAATATTGAAAAGGAGGTTGCTGACAGATCGAGCAGCAAGCTTGTGTATTTGAACCTCTGCTCACAAGAGCTCCGACATCGTGCAAATAACACAAAATCCAATGTAGCTGAAGATACAAATCCCCCGGAGTCATCTGCCAAGCTTCCTGATCAATCAGAACATAATGCTGATGATTGTTCAACTGACCCTGCTGTTGAAGCCTTGAAAAATGCTGGTCTATTGTCTGATTCACCGCCTAGCAGTCCACATGATAACAGAGAAATAGGTAATGAAAATGATACTTCAGGGCCTGATAATATACTTGAATTGGATTCTCATCCTGAGCTGGACATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGACTACATTGGGGTTTCAAAGGTCTTGAACCCAAAACCAGAGGAAAGTGAGTCGAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAGTCAGATGCAGCTTTGGATGACTCAGACTGTAAAGGGTCCCTTAACAGTGAAGTACTACGGGATGCCTCCGGCTCAACAACCTCTCACATCGAAACAGTCCCTAGGGACTCAGCAACTGATGCAGAGATTGGCGGGCCTTCTGCTTCTGTTTCTTCTGAGTTATGTGAGAGTGCTGTCGAGCCAGCTGATTCCGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTCATAAAAAAATTTCCAGATGCCGAACCAAGAACAACATGTGGAGAGGGCAAGAAAGAAACACCAAGTGAGGCCACTGACAAATCTAATGTATCTGAAACTGGTAAAAATTCCCCAGGGAAAGAAGAGAAATCTGATGATATGAGTGCGAAGCAGTCTGAGTGTGACTCGATAAACCATGTAACAAAGAAGGTAGAAGCCTATATCAAGGAACATATGAGGCCACTGTGCAAGAGTGGTGTGATCACAGCAGAACAATACAGGTGGGCAGTTGCAAAAACAACAGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAGCTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACCGAAAAAATTGA 3726 0.4106 MEMELEAEAEADFMTNDMLTLPHDPFDPNHIHDDDNLAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGGNKVEDDSFFRDDEWSIEGKNNTLSFPSYYIDENAVTCLDGDGCKVRSGLETIEGDSDLDTSIACDSCDTWYHAFCVGFDTEGTSESTWLCPRCVVGEVSKGRDTDSMESTMVECNPEHINNQCQAEDSFSRKVCVSVADAGETAVVVSMVDGHKWVPSASEKGLLPLELGRDQLTESCILDSDTTNQQKAMEKKIMSPIVKEQELELCLSHNVSGSLSSKSLEHNDPKESAHGARSGPSNLDETKLADESHVKTSPSRNESDMGLHLGLSVGSFLSVDNVDKDGIKDHTTGVKHLSPDECSMEGDVIENDVKKDNTSVTAGKRKHVDHSNDEGHFKVDGDVKPELPIEVSRKKIRAAGGQMTSINNSADAQLSDNGQKSSALNHSASKEVVRPTIMNIVKGTNRRLSKGPTGTNSSDNVSRKDENMAGLRVKKIMKRVADDGESSLIVQNLRKEIREAVRNKSSINFEENIDTKLLAAFRAAIAGPKTEPVNKLTPSALKAKKSMLQKGTVREHLTKKIFGTSNGKRKRAWDRDCEIEFWKYRCMRATRPEKIETLKSVLDLLRKNSESTQGPECQAKDTILSRLYLADTSVFPRKDDVKPLSVLKTDASSEQTKQNNPSGTDIKNLSCNARVCSSETKVDKIIHDSAGDNSASRKTSVSSSAGAKVNAKELGLKSDSTKSDKKKWALEFLAKKTAAESKRTANGSQEDNTIFKDKFPLLAQLPADMRPVLGPSCHNKIPISVRQTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADRSSSKLVYLNLCSQELRHRANNTKSNVAEDTNPPESSAKLPDQSEHNADDCSTDPAVEALKNAGLLSDSPPSSPHDNREIGNENDTSGPDNILELDSHPELDIYGDFEYDLEDEDYIGVSKVLNPKPEESESKVKLVFSTMNLKSDAALDDSDCKGSLNSEVLRDASGSTTSHIETVPRDSATDAEIGGPSASVSSELCESAVEPADSEFEELYGPDKEPLIKKFPDAEPRTTCGEGKKETPSEATDKSNVSETGKNSPGKEEKSDDMSAKQSECDSINHVTKKVEAYIKEHMRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03021 1241 MobiDBLite consensus disorder prediction 750 765 - -
Aip03g03021 1241 Coils Coil 548 568 - -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 908 927 - -
Aip03g03021 1241 SMART ring_2 44 82 IPR001841 -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 745 768 - -
Aip03g03021 1241 ProSiteProfiles Zinc finger PHD-type profile. 76 196 IPR019787 -
Aip03g03021 1241 PANTHER RING/U-BOX PROTEIN 114 1238 - -
Aip03g03021 1241 SUPERFAMILY FYVE/PHD zinc finger 157 196 IPR011011 -
Aip03g03021 1241 Pfam PHD-finger 157 194 IPR019787 -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 458 483 - -
Aip03g03021 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 143 IPR013083 -
Aip03g03021 1241 ProSiteProfiles Zinc finger RING-type profile. 44 83 IPR001841 -
Aip03g03021 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 199 IPR013083 -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 417 439 - -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 342 356 - -
Aip03g03021 1241 PANTHER RING FINGER PROTEIN 41, 151 114 1238 - -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 459 483 - -
Aip03g03021 1241 Pfam Zinc finger, C3HC4 type (RING finger) 44 82 IPR018957 GO:0046872
Aip03g03021 1241 MobiDBLite consensus disorder prediction 1097 1132 - -
Aip03g03021 1241 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 1051 1163 - -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 1143 1163 - -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 908 982 - -
Aip03g03021 1241 SUPERFAMILY RING/U-box 35 89 - -
Aip03g03021 1241 MobiDBLite consensus disorder prediction 316 364 - -
Aip03g03021 1241 SMART PHD_3 142 194 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03021 44 95 C3H Transcription Factor Family AT3G58030 37.037 8.24e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip03g03021 PHD 1.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03021 - - adu:107479708 2404.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03021 03 90403596 90410794 Aip03g03021 03 90403596 90410794 ECH