Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02981 atgagagagagcgCGAGCGAGAGAACAGAGAGTCTTATTGAAGACCTCCCTTTGAAGTTGTCAAGTATACAACCTTTAGACTCTGGTTCTTGCTTTCAATGGAAGAATCTGAAGGGCTTGGCCACCATGGTTGAGAACTGTGATGATGAGTTTCTAAAGTTTGATCTGGAATACCAACAGGATGTGACAGCAACTAAAAGAAATAAATTTGAGGATTATTTTTTGAAGCGACGAGAGTTGCTCATGGGAATATATGAGAAGGATTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGAAACAATCTATCCTGGCAAAGTTCAAATTGTATTGCTCTCACGCCTGTGGAACAATTTTGTTAATAGTGTCTACTTAG 477 0.3857 MRESASERTESLIEDLPLKLSSIQPLDSGSCFQWKNLKGLATMVENCDDEFLKFDLEYQQDVTATKRNKFEDYFLKRRELLMGIYEKDFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQKQSILAKFKLYCSHACGTILLIVST 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02981 158 Gene3D - 41 157 IPR027417 -
Aip03g02981 158 Pfam DEAD/DEAH box helicase 94 133 IPR011545 GO:0003676|GO:0005524
Aip03g02981 158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 135 IPR027417 -
Aip03g02981 158 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 58 139 - -
Aip03g02981 158 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 58 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02981 Aip-Chr3 86396801 86399141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02981 70 132 Eukaryotic Initiation Factors Gene Family AT5G11200 46.032 8.17e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02981 K12614 - ahf:112735966 234.958