Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02922 ATGAGCATCCTTTTGCAGGCTATATTTCAAAATACATCTTCTGAAGTAGTTAAGGATAAAACCGGCAATAACACAATATTGGGAACACCAACAGAATCATCATTGTTGGAATTTGGTTTGCTCGAAGGTGGTGATTTTGATGCACAGCGCAATACCTATAAGATAATCAAGGTTGAGCCTTTCAATTCAGTTCGGAAGAAGATGTCTGTGCTTGTGAGTCTTCCTAATGGAGGGGTCAGAGCTTTCTACAAAGGAGCATCAGAAATAATATCAAGAATGTGTGAAAAAATCATTGATTCTAATGGAAATGATGTTGATCTTCCTGAAGAACAGGCGGATAAAGTTAATGCTTTGAGAACTCTTTGTGTGGCTGTTAAAGATATAGATGCAACAGAAGGGAAAAACAAGGCAGAAGTAATAGCTCCGTCGCCAAAGTCGCTAATGGCAATGAACCGTTTCATGTGCGAGATATGCAAGAAAGGGTTCCAGAGGGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCGTGGAAGCTTCGGCAGCGAGAGAAGGAGGTGGTGGTGTGGAAGAAGGTAGACGCGGGTTGA 594 0.4343 MSILLQAIFQNTSSEVVKDKTGNNTILGTPTESSLLEFGLLEGGDFDAQRNTYKIIKVEPFNSVRKKMSVLVSLPNGGVRAFYKGASEIISRMCEKIIDSNGNDVDLPEEQADKVNALRTLCVAVKDIDATEGKNKAEVIAPSPKSLMAMNRFMCEICKKGFQRDQNLQLHRRGHNLPWKLRQREKEVVVWKKVDAG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02922 197 Pfam Cation transport ATPase (P-type) 13 97 - -
Aip03g02922 197 Gene3D - 1 152 IPR023299 GO:0000166
Aip03g02922 197 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 132 IPR023299 GO:0000166
Aip03g02922 197 PANTHER CALCIUM-TRANSPORTING ATPASE 1 149 - -
Aip03g02922 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 175 IPR013087 -
Aip03g02922 197 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Aip03g02922 197 Pfam Zinc-finger double-stranded RNA-binding 153 175 IPR022755 -
Aip03g02922 197 Gene3D Classic Zinc Finger 153 176 - -
Aip03g02922 197 PANTHER CATION TRANSPORTING ATPASE 1 149 - -
Aip03g02922 197 SUPERFAMILY beta-beta-alpha zinc fingers 152 176 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02922 Aip-Chr3 81414591 81415598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02922 2 129 Primary Pumps ATPases AT2G41560 60.584 1.24e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g02922 Cation_ATPase 6.1e-18 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02922 K01537 - gmx:100785768 187.578