Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02920 ATGGGAAGAAGTCCATGCTGTGACAAAGCTAACGTGAAAAGAGGGCCATGGTCTCATGAAGAAGATGAAATACTCAAAAGCTACCTCAACAAACATGGCTCTGCTGGTAACTGGATAGCTCTTCCTCTCAAAGCAGGCCTTAAACGCTGCGGGAAAAGCTGTCGTCTGAGATGGCTCAACTATCTCAGGCCTCACATCAAGCATGGAGCTTTCACTGACGATGAAGACAAACTTATCTCCACCCTTTATGCTACCATTGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTACCTGGAAGAACTGATAATGATGTCAAAAATCACTGGAACACTAAGCTTAGGAAGAAGTTCTTCGCAGGAGGAATAAACACTGCCAATGCCACTACTGTCCTCAACACTGCTTCTTCCAAGTTCCCAACTTTCACTCCTCAAATTGAAGCCTTTGATCATAATAACAACACCCCAACTACTTGTTTTGAGTCTGCTGTTTTGGGTTTGTACCAAACACCATTCCCAGTTCCATCAAAAATGCTGCCTTTGGAATCAGACATTTCAGCTGCTAATCCCTTGGTAATAAAAGAGAAAGATCATGTTGGTCATCAGTGGCTTGGTTATTATGCTGAAGAAGATGATGCATTCTTGCTTGATTTTGTGCAAAATGGATTTGCTTATTCTCAATATAAAAACACCCAACTAGACCCATCATCATCGTCGTCGTCATATATCTAA 729 0.4239 MGRSPCCDKANVKRGPWSHEEDEILKSYLNKHGSAGNWIALPLKAGLKRCGKSCRLRWLNYLRPHIKHGAFTDDEDKLISTLYATIGSRWSLIAAQLPGRTDNDVKNHWNTKLRKKFFAGGINTANATTVLNTASSKFPTFTPQIEAFDHNNNTPTTCFESAVLGLYQTPFPVPSKMLPLESDISAANPLVIKEKDHVGHQWLGYYAEEDDAFLLDFVQNGFAYSQYKNTQLDPSSSSSSYI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02920 242 PANTHER OS09G0431300 PROTEIN 1 143 - -
Aip03g02920 242 SMART sant 13 64 IPR001005 -
Aip03g02920 242 SMART sant 67 115 IPR001005 -
Aip03g02920 242 PANTHER OS09G0431300 PROTEIN 1 143 - -
Aip03g02920 242 CDD SANT 16 62 IPR001005 -
Aip03g02920 242 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aip03g02920 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip03g02920 242 Gene3D - 69 137 - -
Aip03g02920 242 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aip03g02920 242 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aip03g02920 242 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip03g02920 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aip03g02920 242 Gene3D - 7 68 - -
Aip03g02920 242 CDD SANT 70 113 IPR001005 -
Aip03g02920 242 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02920 Aip-Chr3 81377257 81378155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02920 1 119 MYB Transcription Factor Family AT5G57620 73.950 1.51e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g02920 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02920 K09422 - gmx:778160 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02920 03 81377257 81378155 Aip03g02920 03 81377257 81378155 ECH