Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02905 ATGGAAGCTAGTACCGGGCTTTTTGCTGCGACCCATGACAACAATGATCTTGTGGTCATTCAAGGACACAACGAGCCAAGGCCTGTGAAGAACTTAGATGGCCAACTATGTGAAATATGCGGCGACTTAGTGGGACTAACTGTGGACGGAGACTTGTTTGTAGCTTGCGAGGAATGCGGGTTCCCCGTGTGTAGGCCTTGTTACGAGTACGAAAGAAGGGAAGGGACTCAAGTTTGCCCCCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTAGAGGGAGACGAAGACGAAGACGATGTGGATGATATAGAACATGAATTCAAAATGTTGGAAGAAAAGGAAGAGTTGCGGCAAAGGAAGAAGAGTAGCGGATATGATAATGAGAATGCTAAATCAGCATCCTTGGCCAAGCCTAAATCTGAAAATTTTGAACGTCTTCGTGATGTAGGCTATGAAAAATTTGCTGACAAAGAGAGAGCAGATGACTGGATGTTAAACCAAGGAAATCTATGGCCTGAAACTGAGGCTACAGTTGATCCCGAAAAGGCTATTAGACAGCCACTCTCAAGGAAGGTGGCAATACCATCCGGAAGACTCAGCCCTTACAGGATGATGGTTGCAGCGAGGCTCGTGATTCTCTTGCTATTCTTTCAATACAGAATCTTCCACCCAGTACCTGAAGCAATTGGACTCTGGTTCACATCTGTGGTGTGTGAAATTTGGCTAGCATTGTCATGGCTGGTTGATCAACTTCCTAAATGGTTTCCCATTGATCGCCAGACGTATATTGATCGTCTTTCAATCAGATTTGAACCGGCGGACAAGCCGAATATGCTTTCTCCAATAGATATATTTGTCACTACAGTGGATCCGACGAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCTCTGGATTACCCAGCTGACAAAATCTCATGTTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAGGCTCTTCAAGAAACTGCTGAATTCGCAAGAAAATGGGATAAGCTTCAGACAACATATGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATTAATGCACTTGTGGCGAAGTCCATGAGAGTTCCAGCAGAAGGGTGGACAATGAAAGATGAGACACCGTGGCCGGGAAACAACACCAACGATCATCCAAGTATGATACAAGTCCTTCTTGCTCGAGGTGGAGGCCACCACCCCGACCAACTTCCCTGTCTTGTATACATATCTCGTGAGAAAAGGCCGGCATTCCAACACCACAACAAAGCTGGTGCAATAAATGCCTTGCTTCGAGTATCAACAGTGCTAAGCAATGCTCCCTTCGTGCTGAACTTGGATTGCAATCATTATGTTAATAACAGCAAAGTCGTGCGTGAGGCCATGTGTTTCTTTATGGACATCCAACTTGGGAATGGCATTGGCTTTGTTCAGTTTCCTTTAAGATTTGACAGCCTTGACAGGAACGATCGTTATGCCAACAAGAACACTGTTTTGTTTGATGTGTCAAAACCGCCACGAATTGTTCAAGTGCACTCAAAACAGGATGAAAATGAAGAGGAAGATGCAGGAATAACAGAAGAAGACAAGCAGCTACTGAAATCAGAGATGAATTTTGAGAACAGATTTCAAAAATCACATTTTGCTAATTCTTCATCAACAGAAGAAGGTGGCGTCGATGCTTCTTCCGGTCAGGAGGCCCTGCTCAAAGAAGCCATTCATGTCATGAGCTGCAAATACGAAGACAGAACTCTATGGGGATATGAGGTTGGCATGAGCTATGGATCTATAGCTGCAGATACTCTTACGAGTTTCAAGTTGCATAGTCGAGGCTGGGAATCGGTATATTGCATGCCGAAGAGAGCTGCATTCAGGGGGACAGCTCCTATCAACCTTACAGATAGACTTAACCAAGTGCTTAGATGGGCGGTGGGATCACTTGAGATCCTCTTCAGCCGCCATTGCCCGCTGTGGGACATTCGCAAGTCTAGTCTTTATTAG 2055 0.4487 MEASTGLFAATHDNNDLVVIQGHNEPRPVKNLDGQLCEICGDLVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMLEEKEELRQRKKSSGYDNENAKSASLAKPKSENFERLRDVGYEKFADKERADDWMLNQGNLWPETEATVDPEKAIRQPLSRKVAIPSGRLSPYRMMVAARLVILLLFFQYRIFHPVPEAIGLWFTSVVCEIWLALSWLVDQLPKWFPIDRQTYIDRLSIRFEPADKPNMLSPIDIFVTTVDPTKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWDKLQTTYVKERRTMKREYEEFKVRINALVAKSMRVPAEGWTMKDETPWPGNNTNDHPSMIQVLLARGGGHHPDQLPCLVYISREKRPAFQHHNKAGAINALLRVSTVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDVSKPPRIVQVHSKQDENEEEDAGITEEDKQLLKSEMNFENRFQKSHFANSSSTEEGGVDASSGQEALLKEAIHVMSCKYEDRTLWGYEVGMSYGSIAADTLTSFKLHSRGWESVYCMPKRAAFRGTAPINLTDRLNQVLRWAVGSLEILFSRHCPLWDIRKSSLY 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02905 684 SUPERFAMILY Nucleotide-diphospho-sugar transferases 295 669 IPR029044 -
Aip03g02905 684 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 348 520 - -
Aip03g02905 684 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 347 - -
Aip03g02905 684 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 521 678 - -
Aip03g02905 684 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Aip03g02905 684 PANTHER CELLULOSE SYNTHASE 521 678 - -
Aip03g02905 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Aip03g02905 684 Coils Coil 358 378 - -
Aip03g02905 684 MobiDBLite consensus disorder prediction 118 141 - -
Aip03g02905 684 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 404 527 IPR029044 -
Aip03g02905 684 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 275 378 IPR029044 -
Aip03g02905 684 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Aip03g02905 684 Pfam Cellulose synthase 348 521 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aip03g02905 684 Pfam Cellulose synthase 532 678 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aip03g02905 684 Pfam Cellulose synthase 286 347 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aip03g02905 684 SUPERFAMILY RING/U-box 21 105 - -
Aip03g02905 684 PANTHER CELLULOSE SYNTHASE 1 347 - -
Aip03g02905 684 PANTHER CELLULOSE SYNTHASE 348 520 - -
Aip03g02905 684 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02905 Aip-Chr3 80441886 80449591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02905 1 676 Cell Wall Biosynthesis AT5G17420 56.290 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02905 K10999 - gmx:100777270 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02905 03 80441886 80449591 Aip01g03178 01 134903804 134908923 PCT