Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02892 ATGGCTGGAATACTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGACTCCATCAGAGTAAAGGATTCTTGGATTTAACATCTTCTTCCACGGCTTCTTCTACAAGGCGCACTTCTTTTTGTTTGTATGCAGCAAACCATGAGCCCCTTCATTCCTTTTCATCTTCTTCTTTGCTGCATAGAAGCGTGATCTACCATGCGCAACCAGATTTGAGTATGGTTGGAGAAGCCAGAGAAGCCAGACAAAGATTGGATGACAAATTCAGATCACAAAGGAAATCGGAATACAAAAGCATAAAATGTTCGGAAAATAGACAAGCAAGCATAACAGAGTTGCACACAGAGGTATATGGTTCAAAGAAAAGTGGTTCTAGAAGGTTCAATTGGTCCAAATTGAGGTGGAAAGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAGTTATTCAAGGTTGGAGAGACTCTGATGCATCTCCCTTGTGCCCATAAGTTCCATTCCAAATGCTTGAACCCATGGTTTGAAAATAATTCACATTGTCCATGTTGCAGAACTGCCATTATTTAA 561 0.4135 MAGILPGVECARRRRLHQSKGFLDLTSSSTASSTRRTSFCLYAANHEPLHSFSSSSLLHRSVIYHAQPDLSMVGEAREARQRLDDKFRSQRKSEYKSIKCSENRQASITELHTEVYGSKKSGSRRFNWSKLRWKASEQEDCAVCLELFKVGETLMHLPCAHKFHSKCLNPWFENNSHCPCCRTAII 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02892 186 Pfam Ring finger domain 140 182 IPR001841 -
Aip03g02892 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 186 IPR013083 -
Aip03g02892 186 CDD RING-H2_PA-TM-RING 140 182 - -
Aip03g02892 186 SUPERFAMILY RING/U-box 128 185 - -
Aip03g02892 186 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 185 - -
Aip03g02892 186 SMART ring_2 141 181 IPR001841 -
Aip03g02892 186 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Aip03g02892 186 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02892 Aip-Chr3 79424009 79426779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02892 1 99 C3H Transcription Factor Family AT2G15580 42.727 9.03e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02892 - - gmx:100527583 249.21