LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g02881	ATGGCTTTTCGCGACCACCAACCACACGAAATTACTTTTCAGTCCTTCACGGACGAGCAACATTTAAATCAGAACAGAGACATGCAGAGGATGCTAACTCTCTCCGGCGCCGGCGATGGAGGACCGGCTCCGACGTGGCTGAACAACGTTCGGCAGCAGAATTTCCTGCACCTTCAGCCGGACGCGTCGTCGGCACGAAACGACGACGTTCGAGGCATGATGGCGGCGGCAGCTACGTCACCGGAGAAGAGCATGGATCATCGGAAGAACCACCTCCAGCAGCAGCGGACGATGACGGAAAGTAACAACTGCGACTCAGAGGATGCGGCGGAGTACAAGGCGGACATCCTAGGACACCCGCTTTACGAGCAGCTGCTGTCGGCGCACGTGTCGTGTCTGAGGATTGCGACGCCCGTTGACCAGCTACCGAGAATCGACGCTCAGTTGCAGCAGTCGCAGCGCGTGGTGGAGAAGTACTCTGCGCATGGGAATAATGGTGCTCTCAATGAGAAGGAGCTTGATAACTTCATGACACATTACGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTGCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACGGGTGTATCTCCCGGAGAAGGGACAGGTACGACGATGTCGGACGACGAAGACGATCAGGCGGCAGAGAGCAATGGCAACTTGTACGAAGGATGTTTAGATGGCGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCAACTGAAACTGAAAGATCTCTAATGGAGCGTGTTCGCCAGGAGCTAAAGCACGAGCTAAAACAGGGTTACAAGGATAAAATTGTTGACATAAGAGAAGAAATTCTGCGAAAGAGAAGAGCCGGGAAGCTTCCTGGAGATACCACCTCTCTCTTAAAAGCTTGGTGGCAATCTCATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCGAGGCTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGGAATTGGCATACTAATCCTTCGTCGTCTACTGGCTCCAAAAGCAAGCGCAAGAATAATAATAATAATAATAGTGGTGGTGCAGGTGAAACAAATAACCAGAGCTTCATGTGA	1176	0.5051	MAFRDHQPHEITFQSFTDEQHLNQNRDMQRMLTLSGAGDGGPAPTWLNNVRQQNFLHLQPDASSARNDDVRGMMAAAATSPEKSMDHRKNHLQQQRTMTESNNCDSEDAAEYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSAHGNNGALNEKELDNFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGTTMSDDEDDQAAESNGNLYEGCLDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKSKRKNNNNNNSGGAGETNNQSFM	391

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip03g02881	391	Pfam	KNOX2 domain	170	217	IPR005541	GO:0003677\|GO:0005634
Aip03g02881	391	SMART	KNOX2_2	163	218	IPR005541	GO:0003677\|GO:0005634
Aip03g02881	391	SMART	ELK_2	276	297	IPR005539	GO:0003677
Aip03g02881	391	MobiDBLite	consensus disorder prediction	353	391	-	-
Aip03g02881	391	PANTHER	CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN	34	378	-	-
Aip03g02881	391	SMART	HOX_1	298	363	IPR001356	GO:0003677
Aip03g02881	391	SUPERFAMILY	Homeodomain-like	298	362	IPR009057	-
Aip03g02881	391	ProSiteProfiles	ELK domain profile.	276	296	IPR005539	GO:0003677
Aip03g02881	391	Pfam	KNOX1 domain	112	153	IPR005540	GO:0003677\|GO:0005634
Aip03g02881	391	SMART	KNOX1_2	110	154	IPR005540	GO:0003677\|GO:0005634

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g02881	Aip-Chr3	77953524	77963148	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g02881	110	380	Homeobox Transcription Factor Family	AT5G11060	81.752	1.24e-162	460

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Aip03g02881		KNOX2	4.7e-18	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g02881	-		-	gmx:100816347	575.089

Showing 1 to 1 of 1 entries

Previous1Next