Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02841 ATGAATTTGAAGGAGAGGAAAAATGGAGAAAAACAAAAGGTAGTAGTTAACGAGGCTTTGGTTGTAGCTGTGGTTGTGGTGGTGGTGGTAGCAGCAGAGGGGGTGGGATCTACTGCAGAGGCATCGCATGGAAGATCCTGTGTTCTTGAGACAATGGTTCAATTTGCGATTGAGAAGGCATGTGAAGAGGGAAAATGGGCGGCAGAGATTCGCGATCCAAGGAAAAGTGTTCACGTTTGGCTTGGAACCGTCAACACCACCAAAGAAGCCACCAGGGCCTATGATAGAGAAGCTCGTAAGATTCGCGGAAAGAAAGCTAAAGTGAACTTCTCCAACGAGGATGACGAACCTCCATTCAACAATCTCGCAACATTATTCCAAACCTTCCTCTTCTTCCCATTCGAAGATTGA 411 0.4647 MNLKERKNGEKQKVVVNEALVVAVVVVVVVAAEGVGSTAEASHGRSCVLETMVQFAIEKACEEGKWAAEIRDPRKSVHVWLGTVNTTKEATRAYDREARKIRGKKAKVNFSNEDDEPPFNNLATLFQTFLFFPFED 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02841 136 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
Aip03g02841 136 CDD AP2 64 110 IPR001471 GO:0003700|GO:0006355
Aip03g02841 136 SMART rav1_2 64 117 IPR001471 GO:0003700|GO:0006355
Aip03g02841 136 PANTHER DNA-BINDING DOMAIN 64 118 IPR044808 GO:0003700|GO:0009873
Aip03g02841 136 SUPERFAMILY DNA-binding domain 62 111 IPR016177 GO:0003677
Aip03g02841 136 PANTHER EREBP TRANSCRIPTION FACTOR 64 118 - -
Aip03g02841 136 Gene3D AP2/ERF domain 57 112 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02841 Aip-Chr3 69794566 69795366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02841 64 113 AP2-EREBP Transcription Factor Family AT1G72360 72.000 2.71e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g02841 AP2 0.00018 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02841 K09286 - cpap:110808160 100.138