Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02825 ATGAAGAACGCAAGGCTCTCAACTTCAGCTGCAAGCAGCATGAACATGGGGAGAACACTTGCACAGTACAGTGCAGACGCTGAGATTCTTGCAGAGTTCGAGCAATCAAACGTGTCCGGTAAATCATTTGACTACTCAAAGTCAGTGGTTGACCCACCGAAATCAGTCTCTGAGGAGAAGATGACTGCCTACTTGTCAAGAATCCAAAGGGGCGGACTCATCCAGCCCTTTGGCTGCATGCTGGCAGTCGAAGAACCGACTTTCAACATCATTGGCTACAGCCAGAATTCATTTCTCCTCTTGGGTGTCGAGATTCAGTCCGACACCGAAGAGTTAATGGGTGGTCTTCTTGGAGTTGATGCCACTACACTCTTCACTCCTGCTTCCGGGGCTTCGCTTGCGAAAGCTGTGGCATCGAGGGAAATCTCGCTTCTTAATCCTGTTTGGGTGTACGCAAGGGCAACGCAGAAGCCGTTTTACGCGATACTTCACCGGATTGATGTCGGAGTTGTGATAGATTTGGAACCTGCAAGGTCCAGTGACCCTGCATTGTCGTTCGCAGGGGCGGTTCAGTCGCAGAAGCTAGCCGTTAGAGCGATTTCTCGGCTGCAATCGCTTCCCGGCGGAGACATTGGTCTTCTGTGTGACTCTGTTGTAGGGGAAGTTCAAAAGCTTACGGGGTATGACAGAGTTATGGTGTATAAATTCCACGAGGACGATCACGGGGAGGTTATTTCGGAGATTAGGAGGTTGGATTTGGAGTCTTATTTGGGTCTGCACTACCCTGCCACTGATATCCCTCAAGCCTCAAGATTCTTGTTCAAGCAAAATCGCGTTCGGATGATTTGTGATTGTAATGCTAAGCCGGTTAAGGTAACTCAGAACCAAGAGTTGAGTCAACCGCTTTGCTTGGTGAACTCAACTCTGAGGGCGCCACATGGATGCCACACGCAGTACATGGCTAACATGGGCTCCATTGCTTCGCTGGTTATGTCAATTGTGGTAAATACCAAAGATTCCATGAAGCTATGGGGTTTGCTAGTGTGCCATCACACTGCGCCGCGCTATGTGCCTTTTCCGGTTCGCTACGCTTGTGAATTTCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAGATTCAGTTAGCAGCGCAAATGGCAGAGAAAAGGATTCTCAAGACACAAACTTTGCTGTGTGACATGCTCCTTCGCGACGCGCCGTTTGGGATTGTTACTCAGTCTCCTAATATCAAGGATCTTGTCAAGTGTGATGGAGCTGCCCTGTATTATGATGGGAACTGTTGGTTGTTAGGCACAACACCGTCCGAATTGCAGGTAAAAGACATTGCTGAATGGTTGCTTAGTACTCACGGTGACTCGACCGGTTTGAGTACAGACAGTTTGGCTGATGCTGGTTATCCTGGTGCTGCTTTACTTGGGGATGCAGTGTGTGGCATGGCGATGGCGCAAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGGTCTCACACTGCTAAGGAAGTTAAGTGGGGAGGGGCCAAACACCATCCTGAGGATAAGGATGATGGAGGGAAAATGAATCCAAGATCATCATTCAAAGCATTTCTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAACTTATAATTAGAGATTCATTTCACAATTCAGAGAATAGTGGTATTAAGGCTATGAACTACATACAGAGAAGTGATGCTTCAAGTGGTGGGATTGATGAGCTAAGTTCAGTAGCATTTGAAATGGTGAGGTTAATTGAGACGGCAACTGTGCCGATTTTCGGGGTTGACACAGGTGGCTTAATCAATGGTTGGAATGTGAAAATTGCGGAATTGACAGGTTTGCTGGCAAATGAAGCTATTGGTAAATCACTAGTGAATGAAGTAGCGCATGCAGACTCGCGCAACAATCTTGAAAATATTCAAAGTAAAGCCCTGCAAGGCATGGAAGACAAGAATTTTGAGTTGAAATTGAAACATTTTGGGAATCAACAACAAAATGGAGTTGTATATCTCATAGTGAATGCTTGCACAAGTAGAGATTACACAAATGCCGTTGTTGGGGTATGCTTTGTAGGCCAAGATATCACTTGTGAGAAAGTTGTTCTAGACAAATTTGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGCCTCAATCCGCTAATTCCGCCGATATTTGCTTCTGACGAGAGCGCCTGCTGCTCCGAATGGAATGCAGCCATGGAAAGGATAACTGGCTGGAAGAGAGATGAAGTCATAGGAAAACTTCTTCCCGGGGAAATCTTTGGAAGCTTTGTTAGACTGAAAGGTCAAGATACACTGACTAACTTCATGATCTTGCTTTACCGGGGAATTAGCGGACAAGAATTCGAGAAGTTTCCCTTCGGATTTTTTGATAGGAATGGAGAGTTTATAGAGGCTTACATCACTGCTAACAAGAGGATCGATACGAGTGGAAACATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCTCGCGATCTGAATCAGCCTTCGGATGGACAAAATCTTCCTCAGGGGAGGAAGAGTATATCTGAGTCTAAGGAGTTTGCTTATATATTACAAGAGATGATGAATCCTTTAAACGGTATTCGGTTTACGCATAAGCTTCTGGAGAAAACAGCTGTCTCAGAAAGCCAGAAACAGTTTCTTGACACTAGTGCTGCTTGTGAAAGACAGATAATGGAAATTATTGAGGAAACATATATAGGAAGTATCAATGAAGGCAGCAGTGTGCAGCTAAACATGGAGGAATTTCTTCTTGGGGGTATTCTAGATGCCATTGTGAGTCAAGTGATGCTGTTGGTGAGAGGAAAAAGCTTGCAGCTGTTCCATGAAATTCCTGATGAAATGAAAACACTTGCTCTGTATGGTGATCAAATAAAGCTTCAAGTGGTCTTATCTGACATTCTGCTTAATGTAGTCAACCATACACCATCTCCAAATGGCTGGGTTGAAATCAAGATTTCACCTGGTTTGAAGATAATTCAGGACGGCCATGAGTTTATCCATTTGAAGTTCAGAATGAGCCATTCCGGTCAAGGTCTTCCTTCTAACACACTTCAGGATATGTTTGAAGAAGGGAATCAATGGACTACACAAGAAGGTTTGGGGCTATATATGTCAAGAAAAATGCTTAGTAGGATGAATGGTCATGTTCACTATGCGAGAGAACAAAATAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCGGAGACAAGCATGTTGAGTTAA 3345 0.4451 MKNARLSTSAASSMNMGRTLAQYSADAEILAEFEQSNVSGKSFDYSKSVVDPPKSVSEEKMTAYLSRIQRGGLIQPFGCMLAVEEPTFNIIGYSQNSFLLLGVEIQSDTEELMGGLLGVDATTLFTPASGASLAKAVASREISLLNPVWVYARATQKPFYAILHRIDVGVVIDLEPARSSDPALSFAGAVQSQKLAVRAISRLQSLPGGDIGLLCDSVVGEVQKLTGYDRVMVYKFHEDDHGEVISEIRRLDLESYLGLHYPATDIPQASRFLFKQNRVRMICDCNAKPVKVTQNQELSQPLCLVNSTLRAPHGCHTQYMANMGSIASLVMSIVVNTKDSMKLWGLLVCHHTAPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPNIKDLVKCDGAALYYDGNCWLLGTTPSELQVKDIAEWLLSTHGDSTGLSTDSLADAGYPGAALLGDAVCGMAMAQISSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSSPWEASEINAIHSLQLIIRDSFHNSENSGIKAMNYIQRSDASSGGIDELSSVAFEMVRLIETATVPIFGVDTGGLINGWNVKIAELTGLLANEAIGKSLVNEVAHADSRNNLENIQSKALQGMEDKNFELKLKHFGNQQQNGVVYLIVNACTSRDYTNAVVGVCFVGQDITCEKVVLDKFVKLEGDYKAIIQSLNPLIPPIFASDESACCSEWNAAMERITGWKRDEVIGKLLPGEIFGSFVRLKGQDTLTNFMILLYRGISGQEFEKFPFGFFDRNGEFIEAYITANKRIDTSGNMIGCFCFLQIVSRDLNQPSDGQNLPQGRKSISESKEFAYILQEMMNPLNGIRFTHKLLEKTAVSESQKQFLDTSAACERQIMEIIEETYIGSINEGSSVQLNMEEFLLGGILDAIVSQVMLLVRGKSLQLFHEIPDEMKTLALYGDQIKLQVVLSDILLNVVNHTPSPNGWVEIKISPGLKIIQDGHEFIHLKFRMSHSGQGLPSNTLQDMFEEGNQWTTQEGLGLYMSRKMLSRMNGHVHYAREQNKCYFLIDLELRTRKERQRNLQAETSMLS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02825 1114 CDD PAS 606 713 IPR000014 -
Aip03g02825 1114 SUPERFAMILY GAF domain-like 190 376 - -
Aip03g02825 1114 SUPERFAMILY GAF domain-like 388 565 - -
Aip03g02825 1114 ProSiteProfiles PAS repeat profile. 729 807 IPR000014 -
Aip03g02825 1114 PRINTS Phytochrome signature 125 147 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 225 244 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 310 331 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 410 430 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 495 514 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 528 546 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 598 614 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 617 632 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 691 708 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 PRINTS Phytochrome signature 711 731 IPR001294 GO:0006355|GO:0009584
Aip03g02825 1114 CDD HATPase_Phy-like 983 1096 IPR044767 -
Aip03g02825 1114 TIGRFAM sensory_box: PAS domain S-box protein 602 717 IPR000014 -
Aip03g02825 1114 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 984 1094 IPR003594 -
Aip03g02825 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 181 IPR035965 -
Aip03g02825 1114 Pfam PAS fold 63 177 IPR013654 GO:0006355
Aip03g02825 1114 PANTHER TWO-COMPONENT HISTIDINE KINASE 15 1103 - -
Aip03g02825 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 743 845 IPR035965 -
Aip03g02825 1114 ProSiteProfiles Histidine kinase domain profile. 878 1098 IPR005467 -
Aip03g02825 1114 PANTHER PHYTOCHROME E 15 1103 - -
Aip03g02825 1114 SMART gaf_1 210 390 IPR003018 GO:0005515
Aip03g02825 1114 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 210 370 IPR016132 -
Aip03g02825 1114 CDD PAS 740 848 IPR000014 -
Aip03g02825 1114 Gene3D - 191 541 IPR029016 -
Aip03g02825 1114 ProSitePatterns Phytochrome chromophore attachment site signature. 310 319 IPR013516 -
Aip03g02825 1114 Pfam PAS fold 598 713 IPR013767 GO:0006355
Aip03g02825 1114 Pfam PAS fold 729 848 IPR013767 GO:0006355
Aip03g02825 1114 SMART pas_2 728 798 IPR000014 -
Aip03g02825 1114 SMART pas_2 597 664 IPR000014 -
Aip03g02825 1114 Pfam GAF domain 210 380 IPR003018 GO:0005515
Aip03g02825 1114 Gene3D PAS domain 601 716 - -
Aip03g02825 1114 PIRSF Phytochrome_conventional 1 1105 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Aip03g02825 1114 SMART HisKA_10 871 935 IPR003661 GO:0000155|GO:0007165
Aip03g02825 1114 CDD HisKA 871 926 IPR003661 GO:0000155|GO:0007165
Aip03g02825 1114 Gene3D - 385 558 IPR043150 -
Aip03g02825 1114 ProSiteProfiles PAS repeat profile. 595 666 IPR000014 -
Aip03g02825 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 601 709 IPR035965 -
Aip03g02825 1114 Pfam Phytochrome region 393 568 IPR013515 GO:0006355|GO:0009584
Aip03g02825 1114 SMART HKATPase_4 984 1098 IPR003594 -
Aip03g02825 1114 Pfam His Kinase A (phospho-acceptor) domain 873 927 IPR003661 GO:0000155|GO:0007165
Aip03g02825 1114 Gene3D PAS domain 742 855 - -
Aip03g02825 1114 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 938 1096 IPR036890 -
Aip03g02825 1114 Gene3D - 917 1090 IPR036890 -
Aip03g02825 1114 Gene3D PAS domain 67 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02825 Aip-Chr3 66560404 66565897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02825 7 1098 Histidine Kinase Gene Family AT4G18130 63.077 0.0 1447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02825 K12123 - gmx:100808192 1850.87