Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02812 ATGAAGCAGTCTTTTGATCCTTCATCTTTGGGTCCTTCAAAGATTGCATCCATAAATATACCTAGAGGAGTGGGGTGCAGTGCACGGGGGGTTTCATCTGGATCTGATTCATACCATGCGTCATCTGATGCTAGTCTCTTTTCCAGTTCATTACCTGTTCTTCCACACGAAAAGTTGAACATAAATGATACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGGCTTTGAAAAGCTTCAAGACAAGGGTTCATTAGAAGGTGTCGGTGCTCATGCAGTGGGAACCACGCTTCCTGATGATGAAGAGGAGCTTTTGGCCGGCATAATGGATGATTTTGATCTAAGTGGTTTACCTGGTTCTCTTGAGGACTTGGAAGAGTATGATCTTTTTGGAGATATGGATCTAGATCCTGATCAGGATGGTTTCAGTGCGGGCATGTCCAAATTGAACTTCTCCGATAGTGTTGTTAGCAATGGTTTGCCTCATTATTCTTTTCCTAATGGTGTTGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACGCTATTTGTCCGAAATATTAACAGCAACGTGGAGGATTCAGAGCTGAGAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGTCGCAGGAAACTTGACATACATTTCTCAATACCAAAGGATAACCCATCAGACAAGGATATCAACCAAGGAACCTTGGTGGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAAGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTCATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTAAAATCATTAAATAGAAGTGACATAGCTGGTAAACGGATAAAGCTGGAGCCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTATTGCTCCAACTAAATCAAGAGCTTGATCAAGATGAAGCTCGGAACTTTCGGTATCAAGTGGGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGATGCAGTTCACTAGTCCTGTCGAGCAGAATTCTATGCAAACGATCAGTCATTCTCCTGGCTCTAGGATCATGAGCCCAACAACTGGTAGCCACTTGCCAGGGCTGGCTTCAATTTTGCAACCTCAGGTATCGAATACTGTGAAGGGTGCAACTATCGGCAAGGACTTTGGAAGGAGCAATCACGGAGAGCACATTTTTACCAGTATGAATTCAACGCAAGGAACTACTTTTCAGTCACATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGATCTTTGTCCTTGTTTGGTCCATCAACATCAAAATCAAATGAATCTTCGATGGAAACCTTGTCTGGGGCACAGTTTTTATGGGGAAGTCCAACCCTTTACTCAGAGCGTAATAAGCCTTTAGCTTGGCCAAGACCAGCTGCGGTGCATCCATTTACATCAAATGGCAAGGGGCATGGCTTCCCATACTCAAGTCAAAGTACTTCCTACGTTGGGGCATCCCATCATCATAACGATCATCATGTTGGTTCTGCTCCATCAGGTTTGCCACTAGAGAGGCACTTTGGTTTTCCTGAGTCACCTGAAACTTCGATCATGAATAATGTTGGTTATGGAGGCATGGGTCTGGGGCACACTGATGGAAATTACATGGTTAAAACAAGTGGGTCTGTTAATGCTGGCATTACTATTCCGAGAAATATTTCTGAGAACGGTTCATCAAACCTTAGAATGAGATCTTCTCCTAGGCTTAGCCCCGTGTTTTTGGGCAGTGGTCCATATGCAGGACTACCACCTACTATCATGGATAGTTTGACCGACCGTTCTCAGAGCAGATGGATTGAGAACAATGAAAGCCAAGTTGATAGCAAGAAGCAATTCCAGCTTGATTTGGATAAGATTAAATGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAATAAGTACACTTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACATATGATTTTCTCTATCTCCCAATTGACTTTAAGGTACATTTTTTGCTTGAACAAGTTTTAAATTATGTACAGCTTTCTTCGAAATCTAGAAGCTGA 2244 0.4238 MKQSFDPSSLGPSKIASINIPRGVGCSARGVSSGSDSYHASSDASLFSSSLPVLPHEKLNINDTENGYQSVDDISSGFEKLQDKGSLEGVGAHAVGTTLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGDMDLDPDQDGFSAGMSKLNFSDSVVSNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLLLQLNQELDQDEARNFRYQVGSPVANSPPGNWMQFTSPVEQNSMQTISHSPGSRIMSPTTGSHLPGLASILQPQVSNTVKGATIGKDFGRSNHGEHIFTSMNSTQGTTFQSHSLPEPKFSQYRGSLSLFGPSTSKSNESSMETLSGAQFLWGSPTLYSERNKPLAWPRPAAVHPFTSNGKGHGFPYSSQSTSYVGASHHHNDHHVGSAPSGLPLERHFGFPESPETSIMNNVGYGGMGLGHTDGNYMVKTSGSVNAGITIPRNISENGSSNLRMRSSPRLSPVFLGSGPYAGLPPTIMDSLTDRSQSRWIENNESQVDSKKQFQLDLDKIKCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKVHFLLEQVLNYVQLSSKSRS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02812 747 Pfam RNA recognition motif 2 688 728 IPR007201 -
Aip03g02812 747 Gene3D - 270 364 IPR012677 -
Aip03g02812 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Aip03g02812 747 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 728 - -
Aip03g02812 747 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g02812 747 MobiDBLite consensus disorder prediction 1 15 - -
Aip03g02812 747 SMART rrm1_1 187 255 IPR000504 GO:0003723
Aip03g02812 747 SMART rrm1_1 272 340 IPR000504 GO:0003723
Aip03g02812 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 259 IPR000504 GO:0003723
Aip03g02812 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 338 IPR000504 GO:0003723
Aip03g02812 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 252 IPR000504 GO:0003723
Aip03g02812 747 PANTHER PROTEIN MEI2-LIKE 2 2 728 - -
Aip03g02812 747 CDD RRM2_MEI2_like 270 340 - -
Aip03g02812 747 Gene3D - 174 269 IPR012677 -
Aip03g02812 747 SUPERFAMILY RNA-binding domain, RBD 183 346 IPR035979 GO:0003676
Aip03g02812 747 CDD RRM1_MEI2_like 185 261 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02812 Aip-Chr3 64848129 64855808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02812 181 379 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 5.28e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02812 - - gmx:100800877 1196.8