Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02770 ATGTTGAAGCTGAGGCAAGCTGCATGGCTGTTTCACCACTCTGGTCTTGATGCTTCTGCATTGCTTTTCGCTGATGAGGTGGACATGGAAAATCTTTTGGTGACTGGCCAAGTGACTGTCCTCGTGGTTGGAGAAGATATCCTAACCACTACCGGCGAGGTTGGATCTCAGTGCACCATTCTCACGGATAATTATTGTGAAGATGCCTATGATCTGCTTCAAAACTCTGTACTAAAGAAACTATTGATACATGAAGAGGCTAGGAAGTTTGCATATCAAACAGGGGTTAAGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGAGGTGGACATTCTCGTCGCAAATCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTTGCACTAGATGAGGCAGATAGGATGCTGGATATGGACGATCTTCTCAGCGGCATTATCCGCCGACGAGATTGTGTACTCTCTCAAGCGACGATCTCCTCTAGCTGGTTCTCCTCCGGCGGCACTTTCGCCTCCTGCTACAATCTCAACAAAAAACTTCATAAAACTACGAGATCTGTTGCACAAGTGTTTCCTCAGACGATCTTTTTCGGCGGCGATCTCCTCCATCAACGCTTCTCTTCCATTGACGAGATCTGTTGCGCAAGTATTTCCTACAACGTCGAGTTGTGTTCTGCAATTTTTCCATCTCCATCGAGCTTCATTGAGCATCTAGGTTTTTTATTTTCTTTCTTGTTAGAAGAAATTGGAGTGCTGCGAGAACAATTGAGCATTATAGAAATTGAAGATGTTCATATAATGCATGATGCTGTGTATAATAAATACACAATGTTCAAAGAACTAGCAGACAAGATAGCAGCAGCTGGATTCTTGGTTGTAGTTCCTGATCTCTTGTATGGTGACTACTTTAGTTATGATCCTCAATTTAATAGAGAAGGATGGTTGAAGAAACATGGAGAGAATTGTTTGAAGAATGGAAGGCCTGATAGAGAATTTCTGTATTGGAGATGGGATCCAAGAGGCTATGAGTTACCCCTGTTTGATGCAGGAAAGTTTCTCAACATGATGCATGGAAAAGTGTGGGCGTTGATTGGCGATTCCATATCCCGCAATCATGTGCAATTGTTGATATGCATTCTTTCAACGTTGATGTTTCTTGGAAGAGGATCAAACATTGTTAACCCTGCTTCTTGGAAGAGGATCAAACATATCAGGTTAGTGACATTTTCCTTTTCTCTAGAATATGATTTACTTTTTTCAGTCTTTATGATGCTAAGGCAAGGAGAAGAAACATAA 1347 0.4217 MLKLRQAAWLFHHSGLDASALLFADEVDMENLLVTGQVTVLVVGEDILTTTGEVGSQCTILTDNYCEDAYDLLQNSVLKKLLIHEEARKFAYQTGVKVVVAYGGAPINHQLRDLEKEVDILVANPGRLVDLLERARVSLQMIRYLALDEADRMLDMDDLLSGIIRRRDCVLSQATISSSWFSSGGTFASCYNLNKKLHKTTRSVAQVFPQTIFFGGDLLHQRFSSIDEICCASISYNVELCSAIFPSPSSFIEHLGFLFSFLLEEIGVLREQLSIIEIEDVHIMHDAVYNKYTMFKELADKIAAAGFLVVVPDLLYGDYFSYDPQFNREGWLKKHGENCLKNGRPDREFLYWRWDPRGYELPLFDAGKFLNMMHGKVWALIGDSISRNHVQLLICILSTLMFLGRGSNIVNPASWKRIKHIRLVTFSFSLEYDLLFSVFMMLRQGEET 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02770 448 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 361 402 IPR026057 GO:0016740
Aip03g02770 448 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 81 156 - -
Aip03g02770 448 Pfam DEAD/DEAH box helicase 84 164 IPR011545 GO:0003676|GO:0005524
Aip03g02770 448 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52C 81 156 - -
Aip03g02770 448 Gene3D - 72 183 IPR027417 -
Aip03g02770 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 177 IPR027417 -
Aip03g02770 448 Pfam PMR5 N terminal Domain 333 358 IPR025846 -
Aip03g02770 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 83 194 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02770 Aip-Chr3 56574519 56582580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02770 62 154 Eukaryotic Initiation Factors Gene Family AT3G13920 30.476 1.43e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02770 K11594 - aip:107633235 299.286