Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02732 ATGGCTAGAACCCCGTTATTATTCACTTCATTGTCATTGCTTTTCACTCAGTTCCTATTCACCCCATTTGATGCTGTTCTTGGTTCAAAAGGATCACTAGAATGCCTTAAAGTTTCTCATGCCGAGTTCACTAACTCAGCTAAAGAAGTTGTTGGTGTCTTGAAAAGTGTTACATCCATTCTAAATTCTGAGTTTGTTAGAAATGGCGGAGGCTTTGTCGATGATCATCGCCTTTCGAGCGCTGTTTCAGCGTGCCTTGAGTTGATGGACTTGTCCTCCGATGAGCTCAGCTGGGTTGTGTCCGTTTCTGAAAGTCCCAAAGGCAAGCATAACGGCACTGGTAATTTGAGCTCTGATTTGAGGACATGGCTAAGTGCTGTTCTTGCCAACACAGACACATGCATGGAAGGATTAGAAGAAGGCACCACAAGCAGTGTCAATAATATAAAGAATGCAGTAACCGCTTCCATCAACAAAGTGAACACAATGGTCCAGGATCTCCTAACACAGGTGCACCCTGTTTCGTATAACAGGGTGAGCAAGAGCAAACTTGAGTTTCCTTCTTGGACCGAATCAGAGGATCTTGAGGGTAAAAAGTTGCTAATGGCGGTGGATGCCGTGGTGGCTTTGGATGGGAGTGGGAACTACACACGTGTGAAGGATGCTGTGGAATCAGCGCCCGAGTATAGCATGAAACGTTATGTGATACACATTAAGAAAGGTGTGTATAGTGAGAAAGTTGAGATCCATAGCAAGAAGTGGAACCTTGTGATGATTGGAGATGGAATGGAGAATACTGTTATCACTGGTAACTCGAGTCGTTATTTCCATAATATCACCACATACCGGACTGCAACCTTTGGCAGAGGGTTTATAGCACAAAACATTTCCTTCCATAACACTGCAGGGCCAAGAGGGAGCCAAGCAGTAGCTCTAAGATCACAATCCGATCTCTCAGTCTTCTACCGCTGCGAAATCTCCGGCTACCAAGACAGCCTCTACGCCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTCCAGAACTGCACCATACTTGCCAAGAAAGGCTTACCGGAACAAACCAACACCATAACCGCTCAAGCCGCAAAGGACTCCACCTCACCCTCCGGCTTCTCCATCCAATTCAGCAACATCTCTGCACATTCTGAACTTCTACCTTTCTTGAACTGCACAAGAACGTACCTTGGGAGACCATGGAAGGCATATTCGAGAACGGTTTTCATGCAATCTTACATGAGCGAGATGGTGAGCCCGCAAGGGTGGAAAGAATGGAATGACACGTTGTATTTGGACACACTTTACTATGGTGAGTTCATGAATTATGGGCCTGGATCTGGGCTTTCTGAGAGAGTGAAGTGGCCTGGGTATCATGTTATCAATGACTATGATGAAGCTAGTAACTTCACGGTGGCCCAATTTATTCTGGGGGATCTATGGTTGCCATCAACGGGTGTGAATTATGCATCTCGTTTCACTAAATAG 1692 0.3995 MARTPLLFTSLSLLFTQFLFTPFDAVLGSKGSLECLKVSHAEFTNSAKEVVGVLKSVTSILNSEFVRNGGGFVDDHRLSSAVSACLELMDLSSDELSWVVSVSESPKGKHNGTGNLSSDLRTWLSAVLANTDTCMEGLEEGTTSSVNNIKNAVTASINKVNTMVQDLLTQVHPVSYNRVSKSKLEFPSWTESEDLEGKKLLMAVDAVVALDGSGNYTRVKDAVESAPEYSMKRYVIHIKKGVYSEKVEIHSKKWNLVMIGDGMENTVITGNSSRYFHNITTYRTATFGRGFIAQNISFHNTAGPRGSQAVALRSQSDLSVFYRCEISGYQDSLYAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFQNCTILAKKGLPEQTNTITAQAAKDSTSPSGFSIQFSNISAHSELLPFLNCTRTYLGRPWKAYSRTVFMQSYMSEMVSPQGWKEWNDTLYLDTLYYGEFMNYGPGSGLSERVKWPGYHVINDYDEASNFTVAQFILGDLWLPSTGVNYASRFTK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02732 563 SUPERFAMILY Pectin lyase-like 202 557 IPR011050 -
Aip03g02732 563 Pfam Pectinesterase 407 547 IPR000070 GO:0030599|GO:0042545
Aip03g02732 563 Pfam Pectinesterase 205 337 IPR000070 GO:0030599|GO:0042545
Aip03g02732 563 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 38 337 - -
Aip03g02732 563 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 407 559 - -
Aip03g02732 563 PANTHER PECTINESTERASE 38 337 - -
Aip03g02732 563 PANTHER PECTINESTERASE 407 559 - -
Aip03g02732 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 165 IPR035513 -
Aip03g02732 563 CDD PMEI-like_4 18 175 - -
Aip03g02732 563 Pfam Plant invertase/pectin methylesterase inhibitor 45 155 IPR006501 GO:0004857
Aip03g02732 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 172 IPR035513 -
Aip03g02732 563 SMART PMEI_2 26 170 IPR006501 GO:0004857
Aip03g02732 563 Gene3D - 201 342 IPR012334 -
Aip03g02732 563 Gene3D - 403 562 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02732 Aip-Chr3 53614031 53618148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02732 408 557 Carbohydrate Esterase AT3G43270 65.333 3.11e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02732 K01051 - gmx:100801813 317.005