Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02725 ATGGCTGAATCGTTTGATATGTTGATGGACGTCAGTCCGAAAAAACTTGCATGGAACTTCTTGGTCTATGTTGTTCGTTTGTGGGAAGCTCCTAGCCGGTACAATCCTAAAGAGATCAATAGCATTGAAATGGTTCTTCAAGATAGTCAGGCAAGGAGGATCCAAGCTTCGGTCCCTAAGGCGTTGGTACGTAGATGGAATGATAACCTTGCTGAGTTCAAGATGTATAAAATGTCAAATTTCATTGTTGTAGACAAGAGGGAGAAAACCAAGACAACTATGAATCGGTGGACCTTAAACTTCTCTCACCGAACTGTGGTGCTCTTGGTGGAGAATCCAACTTTCCCACTTCAAGCGTTTCGATTAACGCAAATTTCAGAGTTGTTGAATGCTGACAGGATCGATGACTCTCAATTAGTAGATATTATGGGTAAAGTGGTTGGAAAGGAAGATCCCAGGGAACTCATCACAAGCAAAGGGAAGGAAACGAAGTGTCTAGCTATTTTGGTTGAAGATCTTGATAATTATCGTATTGGGTGTGTGTTGTTTGGGGACATGGTTGATCAAATACTACCATACCTAGATGATGGAAGAGTTGAGCCATTGATAGTGGTCCTGCAGTTCTTCCGACCGAGTAGATGGAATGAGAAAACCTCAGTACAGAGTCATTTCGACGTTTCTAAGCTACGCATCAATCCCGATCTCGATGAGGTTCGCGACTTCCGTGACAGGAGGCTTGCCGCTATACCCTCAAATTTGGTCAGAATTAGTCAAGTCAACACAAACAACTCACATTCTGGGGCAGATGAACTTAAGCGGGGAGATGTGACGGTGAACACAATAGAGGAAGCACTAAACTCAACACAGGAAGGCCCTTTGTGGATTGCTGGAACAGTTGTGGCAATCAATTCTGGCAAGGATGATTGGTTTTACAAATCATGTAAGAAGTGTCCGAAGAAGATTGAAACACCAATTGGAAATAGATACGAGTGTGGAAAGTGTGGCCACACTCACGGAAGTGCATCACTAAGGTTTAAGGTTGAGGTGATGGCCTATGATGGCACTGGTAGCATAACACTGCTTCTATGGGATCGAGAAACAGTTCAACTATGTGGTAGACAAGCAGAACAGATCAAGGATGAGGAGGAACTTTATGCTGAAGGATACCCTGCAGCTCTTGAGAGCCTTTTAGAAAGAAAACTGCTTTTTAAGGTGAATGTCAAATCCTCCAACATCAAGCTCTATGACCAGGTGTATACAGTGATGAAGGTCTGCGAGGATGATACAATTTTTGAAATGCATCTCCCAAATAAAACGTTCTCCACTGTAACTGATACTGGGTGCAGTAACTCGGTGGATTTGTCAGCAGCTATGGTTAATATCAACAATCTTAGTGATTCTCAATATTCTGTGGATGTTGTGGAGGATAGTGTTACAAGCCTCAAGTGCAAAACCCCAGCAAAAATAGCTACCATAGTTTTAAACCAACAAATTCCCATCAACATTGAGAATGAAGAAGAACTGGGGTTTTCAACCAACAAACTTACCCGCAATCGTGGAAAGAGACAGAAGATGCAAGTTCATGATAATAATGAATGA 1599 0.4234 MAESFDMLMDVSPKKLAWNFLVYVVRLWEAPSRYNPKEINSIEMVLQDSQARRIQASVPKALVRRWNDNLAEFKMYKMSNFIVVDKREKTKTTMNRWTLNFSHRTVVLLVENPTFPLQAFRLTQISELLNADRIDDSQLVDIMGKVVGKEDPRELITSKGKETKCLAILVEDLDNYRIGCVLFGDMVDQILPYLDDGRVEPLIVVLQFFRPSRWNEKTSVQSHFDVSKLRINPDLDEVRDFRDRRLAAIPSNLVRISQVNTNNSHSGADELKRGDVTVNTIEEALNSTQEGPLWIAGTVVAINSGKDDWFYKSCKKCPKKIETPIGNRYECGKCGHTHGSASLRFKVEVMAYDGTGSITLLLWDRETVQLCGRQAEQIKDEEELYAEGYPAALESLLERKLLFKVNVKSSNIKLYDQVYTVMKVCEDDTIFEMHLPNKTFSTVTDTGCSNSVDLSAAMVNINNLSDSQYSVDVVEDSVTSLKCKTPAKIATIVLNQQIPINIENEEELGFSTNKLTRNRGKRQKMQVHDNNE 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02725 532 Gene3D - 5 108 IPR012340 -
Aip03g02725 532 PANTHER REPLICATION FACTOR A 1, RFA1 22 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip03g02725 532 CDD RPA1_DBD_A_like 22 107 - -
Aip03g02725 532 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 367 - -
Aip03g02725 532 Gene3D - 113 248 IPR012340 -
Aip03g02725 532 SUPERFAMILY Nucleic acid-binding proteins 280 434 IPR012340 -
Aip03g02725 532 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Aip03g02725 532 CDD RPA1_DBD_B_like 141 245 - -
Aip03g02725 532 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Aip03g02725 532 MobiDBLite consensus disorder prediction 513 532 - -
Aip03g02725 532 CDD RPA1_DBD_C 278 436 IPR013955 -
Aip03g02725 532 Pfam Domain of unknown function DUF223 43 124 IPR003871 -
Aip03g02725 532 Gene3D - 256 433 IPR012340 -
Aip03g02725 532 Pfam Replication factor-A C terminal domain 297 426 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02725 Aip-Chr3 53548994 53551462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02725 8 407 Core DNA Replication Machinery Family AT5G08020 20.991 3.76e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02725 - - aip:107630584 1056.59