Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02724 ATGACGAGAACACAAGAATTAGTGATGATGATAACCTTTTTAGTGTTGGGATGTGCACTAACCATGGCAGAAACAGCAGCTCTAGAGCATGCTCATCACTATGAATGCACTCATACCAGATACCCTAGTCTATGTGATGAAACCTTGAAGGAGTTGATGAGTTCAGGGAATGATAAAAATGTTGATATCATTCTGGCTCTTGTAAACAAAACCATATCTGAAACCAACTTGCCAAGATCATATTTTGCTTCATTTGAGACTCAGGATATTGCTCAACAAGACAAATCATCTTCATCAGTCGGAGGTTATTGTCAAGAGCTAATGGACATGTCAATGAAGAGGTTGGACCAATCCATGAAAGCACTGAGCAAGCCAACAAGAAACAAGGAGGACATCCAAACGTGGCTAAGCGCTTCCCTAACTTTCCAACAAACTTGCAACGACTTCGTACGATCACAAACCTCCAGCGGCGCCGCCACTGCCGTGGTAGACACCATTTCCAAGAAGATGGACTATCTTTCCGCATTAGCCAGTAACTCACTTGCCCTGGTTAACCAAATCACCACGAAGCGAAAAGAAAAGGAAAGCAAAGAGGAATTTCCCGAATGGATTTCTTCGAAAGCAAGAAAACTCCTTCAGGGAGCAGCACCCATAGAAGCGAACGCGGTGGTTGCGCAAGACGGTTCAGGGAACTACAAGACGATTTCTGAGGCCATTGCAGCTGCCACAGGTGGAAGATTTGTGATTTACGTGAAAGCAGGGACTTACAAGGAGAAGATTCGGACAAGTAAGAATGGCATAACGTTGATTGGAGCGGGTAAATATTCGACCGTTATTGTTGGAAGTGAGAGCGTTAAGGGTGGAGCTTCCTTGCCTGACACCGCCACATTCACTCTTTATTCTTTGGGAGACATGAATGTGACTAATTACTACACATTTTCATTATACTATAAGGGGTTTAAGTCTTCTATGTCGGTGCTGATGCATTTCATTATTCTTAA 1001 0.4336 MTRTQELVMMITFLVLGCALTMAETAALEHAHHYECTHTRYPSLCDETLKELMSSGNDKNVDIILALVNKTISETNLPRSYFASFETQDIAQQDKSSSSVGGYCQELMDMSMKRLDQSMKALSKPTRNKEDIQTWLSASLTFQQTCNDFVRSQTSSGAATAVVDTISKKMDYLSALASNSLALVNQITTKRKEKESKEEFPEWISSKARKLLQGAAPIEANAVVAQDGSGNYKTISEAIAAATGGRFVIYVKAGTYKEKIRTSKNGITLIGAGKYSTVIVGSESVKGGASLPDTATFTLYSLGDMNVTNYYTFSLYYKGFKSSMSVLMHFIIL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02724 333 SUPERFAMILY Pectin lyase-like 218 302 IPR011050 -
Aip03g02724 333 SMART PMEI_2 27 183 IPR006501 GO:0004857
Aip03g02724 333 Gene3D - 215 321 IPR012334 -
Aip03g02724 333 CDD PMEI-like_3 36 189 - -
Aip03g02724 333 Pfam Pectinesterase 221 300 IPR000070 GO:0030599|GO:0042545
Aip03g02724 333 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Aip03g02724 333 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Aip03g02724 333 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 188 IPR035513 -
Aip03g02724 333 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 189 IPR035513 -
Aip03g02724 333 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 9 300 - -
Aip03g02724 333 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 187 IPR006501 GO:0004857
Aip03g02724 333 PANTHER PECTINESTERASE 9 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02724 Aip-Chr3 53478399 53482614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02724 10 313 Carbohydrate Esterase AT2G45220 32.362 9.64e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02724 K01051 - gmx:100795439 310.842