Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02714 ATGAGGTACAACAACAAAGAGAACCAGTTGGTCTATCCTTGGGAACTATCGAACACCAGAAAACATGCTGAGGAAATCGCTGGCCAAACAACAACAACAACGTGGGCAGGATTTTTAATGCTTTTTGTGTGGGACTGTGCCCTCAATACACACAAACACAAAAAGGGTTCTTCAAGGCATTCTAGTCTTCTTGCTGTCCTGAATGGTGGTAAATCATGTGAGGATAAGCAAAAAGAGAAGCAAGAGGAAGCTTCTGCTTCTGAGAATCAATCACAATACCCCTTTCCGGAGCTTTCTTCCTCTGGTCGTCTTGAGGTGACGGTATTAACTAAACCTACTGTGGATGAACTCGGTCGAGTAATTGAGCAACTGCAGCCAGATTTTGTTTACCTACAAGGTAGACAGCTAGAAGAAAGTGGAGAAATTGGATCTCTTATATGGGAAGATTTTGACCTGTCTAGTCCAGAAGCATTATGTGCATTGTTTTGTTCAAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAACTTGGCAGAGGCACTCCACTCTAAGGGAATTCCTTACACCATATATTGGGAAAATGACTTTTCAAAGTATGCAGCTTCTCATTTTCATCAAGCTTTGTTCTCAGTGGCACAGAGCACATCGAGTCACACATGGGATGCTTTCCAGCTTGCTCTTGCAACTTTCAGACTATACTGTGTACGAAACAATGTCTTTCCTCCTAACAATAATAAAGGTGGTGGCAAGCTTGGGCCACAAATTCTTGGTGACCCTCCCAATATTGATGTTGGTACAAGTGAACATGATATAGAACAGGAGGAGACTGAACCTGAGAGCATTTCTGCTATAACAATATATGATACTGATGTGAACATGAGATTTCTTGTTTGTGGAGTTAATTGCACTTCGGATGCTTTTTTATTGGGGTCATTAGAGGATGGACTTAATGCTCTCCTATGTACAGAAATACGTGGATGTAAACTTTACAACCGAACAAGTGCTCCACTGCCACCTCTCCAGGCAGCAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACTTGTAGCTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGATACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAGCTTGTTCAAGCAGTTCCTAATCACGTACGAAGCAAATTGTCTTACTCTGAGCCTCGAAGATCATCCTCAGTAGCCTGTGGATCAAGCGTCTTTGAAGTTTGCATGCGTGTTCCTGCATGGGCTTCACAGATTCTGAGACAGCTGGCTCCTAATGTATCATACCGTAGCCTAGTGATTTTGGGAGTTGCTAGTATTCAAGGATTGCCGGTTGCATCATTTCATAAAGATGATGCTGAACGTCTCCTTTTCTTTTGTACTAGGAAGGGGAAAGAAAACTCTAGTAATGATCCTGTTTTCTCTGGGCATCCTACATGGCTGATGCCTCCAGCACCTAGTCGAAAAAGATTTGAACCATGCTCTAGGAAAAAGTCAGAGGATTTTCGTAGTGATAGACATAAATTAGATTTTGCTGCAATGAGACCAATTCCTCATTCTAATTATCATAAGACTCTTCCCTTTTCGGGATTATCTGAGGGTGAAAGGCATGGGGAACATGGAAAGTCAAATCAGTTACTTGCTCCTATTAGGCATAATGTTGTAGGCATAAATTCTGTACCAAAGAGGAAATCTGCATTAAACACATTTCAAGCTCTTCAGGTTATTTCTTTAAATCCGCTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCGATACGAGTTTGCTCAGAGGAGGAATTCTTGAGGGATGTGATGCAGTTTCTGATCCATCGAGGGCATAATCGCCTAGTCCCACCGGGTGGGATAGCGGAGTTTCCTGATGCCATTCTCAATGCAAAACGCCTTGATCTTTTCAACCTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACTTTGACAAATAGAATGACGGGTGTTGGCAATACATTGAAGAGACATTATGAGACTTATCTTTTAGAATATGAATTAGCTCACGATGACGTAGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGATGTGATAAGCGGCAGGGACTTGGGGCATTTAAGGACTATGCTAAAACTGATGGGCTGGAATACGTTTGTCCTCACTGCAGCATTTCAACTTACAGAAAAAAATCTCAAAAAACTCTCTCATTTGACTAG 2385 0.4214 MRYNNKENQLVYPWELSNTRKHAEEIAGQTTTTTWAGFLMLFVWDCALNTHKHKKGSSRHSSLLAVLNGGKSCEDKQKEKQEEASASENQSQYPFPELSSSGRLEVTVLTKPTVDELGRVIEQLQPDFVYLQGRQLEESGEIGSLIWEDFDLSSPEALCALFCSKLPNTVYLETPKGENLAEALHSKGIPYTIYWENDFSKYAASHFHQALFSVAQSTSSHTWDAFQLALATFRLYCVRNNVFPPNNNKGGGKLGPQILGDPPNIDVGTSEHDIEQEETEPESISAITIYDTDVNMRFLVCGVNCTSDAFLLGSLEDGLNALLCTEIRGCKLYNRTSAPLPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAVPNHVRSKLSYSEPRRSSSVACGSSVFEVCMRVPAWASQILRQLAPNVSYRSLVILGVASIQGLPVASFHKDDAERLLFFCTRKGKENSSNDPVFSGHPTWLMPPAPSRKRFEPCSRKKSEDFRSDRHKLDFAAMRPIPHSNYHKTLPFSGLSEGERHGEHGKSNQLLAPIRHNVVGINSVPKRKSALNTFQALQVISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLIHRGHNRLVPPGGIAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDKRQGLGAFKDYAKTDGLEYVCPHCSISTYRKKSQKTLSFD 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02714 794 SUPERFAMILY FYVE/PHD zinc finger 713 781 IPR011011 -
Aip03g02714 794 SUPERFAMILY ARID-like 618 732 IPR036431 GO:0003677
Aip03g02714 794 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 45 790 - -
Aip03g02714 794 CDD ARID 619 717 - -
Aip03g02714 794 MobiDBLite consensus disorder prediction 74 98 - -
Aip03g02714 794 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 45 790 IPR042293 -
Aip03g02714 794 Pfam ARID/BRIGHT DNA binding domain 620 717 IPR001606 GO:0003677
Aip03g02714 794 CDD PHD_ARID4_like 727 778 - -
Aip03g02714 794 Gene3D - 615 717 IPR036431 GO:0003677
Aip03g02714 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 788 IPR013083 -
Aip03g02714 794 ProSiteProfiles ARID domain profile. 617 721 IPR001606 GO:0003677
Aip03g02714 794 SMART ARID_2 614 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02714 Aip-Chr3 53118243 53127611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02714 53 790 ARID Transcription Factor Family AT3G43240 64.065 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip03g02714 ARID 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02714 - - gsj:114367749 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02714 03 53118243 53127611 Aip03g02714 03 53118243 53127611 ECH