Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02712 ATGGGCAACAAGGTTGGAACGCCATGCATGTGCATTCCCATAAAAAGAATGAAAAGAAAGGAAACAAGAGTTGCTGCTAATTTTCCTTCCATCAGTGATTTGAGCCTTGACAATTTTCTGGACGCCATTGAAGAACAAACTCCTACTCATCTTGACGTCCCATCTTTTCTTTGCCAAATCTGCTTTGAATCGAAGCCTCTAAACCAGTCCTTCGACTTGGAGGGTTGCACGCACTTCTACTGCACAAGATGCGTAGCCCAATACATCGTGGCGAAGCTCAAAGACAATGTGTTCAATGTCGTGTGCCCTGAGCCAACATGCTCTGGAATCTTGAACCCTAACCACTACAAATCAATTCTACCGAGCAATGTTTTCGAATGGTGGGAGCGCGTTCTAAGCGAATCGGCGATCCCTGAAAATGTCAAATTCTATTGTCCTTTCAGTGATTGCTCTGCCTTGTTAATCAACAACAATGATGATGGAAAAAGTAGGATGCTGGGATCGGATTGTCCTCATTGCAAGAGAAGCATTTGTGTCAAGTGTCAAGCACCTTGGCATACAGAATTGAGCTGTGAGAAATTTCAGAAAAAGAATAACAAAAGCAATGATCTGATGCTGGATTTAGCCAAGAGAAGGAAGTGGAAACAGTGCCCTAATTGCAAACGCTACGTTGAGAAGACAGATGGCTGCAATGATATAACATGCAGGCCAAAACTCAAGACAACAACAAAGGCCCTGAAACAAACACTGGCAGAGGAGAGAATACCTATAGTATGGGGAGAGGAAGAGGAAAGACTCATGGTGGAAGAGGGCAAGGTAGAGGAAGAGTGA 831 0.4392 MGNKVGTPCMCIPIKRMKRKETRVAANFPSISDLSLDNFLDAIEEQTPTHLDVPSFLCQICFESKPLNQSFDLEGCTHFYCTRCVAQYIVAKLKDNVFNVVCPEPTCSGILNPNHYKSILPSNVFEWWERVLSESAIPENVKFYCPFSDCSALLINNNDDGKSRMLGSDCPHCKRSICVKCQAPWHTELSCEKFQKKNNKSNDLMLDLAKRRKWKQCPNCKRYVEKTDGCNDITCRPKLKTTTKALKQTLAEERIPIVWGEEEERLMVEEGKVEEE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02712 276 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Aip03g02712 276 SUPERFAMILY RING/U-box 55 138 - -
Aip03g02712 276 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 46 238 IPR031127 GO:0004842|GO:0016567
Aip03g02712 276 Gene3D - 189 243 - -
Aip03g02712 276 ProSiteProfiles TRIAD supradomain profile. 54 266 IPR044066 -
Aip03g02712 276 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 46 238 - -
Aip03g02712 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 140 IPR013083 -
Aip03g02712 276 ProSiteProfiles Zinc finger RING-type profile. 58 103 IPR001841 -
Aip03g02712 276 SMART ibrneu5 126 191 IPR002867 -
Aip03g02712 276 SUPERFAMILY RING/U-box 141 197 - -
Aip03g02712 276 Pfam IBR domain, a half RING-finger domain 141 191 IPR002867 -
Aip03g02712 276 SUPERFAMILY RING/U-box 204 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02712 Aip-Chr3 53032346 53037404 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02712 41 236 C3H Transcription Factor Family AT2G19610 27.670 1.37e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02712 K11975 - rcu:8259039 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02712 03 53032346 53037404 Aip03g02712 03 53032346 53037404 ECH