Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02701 ATGCATTCAGGGGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGGGCTTACTCGCTGAGGGCAATGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACATGAATTTAGAATCCACTTCAAGAGGGACACGATTGTGCGTCCAGTACAAGATTCTTCGTTTCCATTGAACGGATTCAATTTTGTTCCGTTCAAAACAATTCAATCAGAGTCTAGAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGGTAACTTGGTCGAATTCACCCGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGGGTAACATTGTGGCAGTCTTTTGCTTTTGATTTGCTCAAATATCTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGGGTGATGGGTGTTTTCAACACAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTGAACAAATTAGATCCTGTTGATGGACAAGGCATAATGTCGCTGGTCTGTGATCAACCTGTTTCAGTTGAAGAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCCGAGATAAAGGAGCATAATCAGGATGCTGTATCTGTTACAGCAGGGACGATTAAAGAAGTTGAGATCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGGAAATTGAGAAAAGATATTTCTGTCCCAATTGCATTAGAGACTACGAGTTCTATGAGCCAAGATACAGCATCCACATAAGGGTGATAGACCACACCGATGCTACCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAATGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGTTATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGATAATGATTAATGAGAATTCTCTGGTCTCTGCTTTCCTGGATAAATATAATCCTGACCCTGCTTGTGAGAGTAAGCTAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAGGTTGGAGAGGAGTCAGTTTCATCCAAATCCAAGAAAAGGAAGTGGGTTGTGATGGAGAACTAA 1314 0.4087 MHSGDTIQCTVKDIFVPIFEGLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKRDTIVRPVQDSSFPLNGFNFVPFKTIQSESREDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLRVTLWQSFAFDLLKYLEEHPCLTYVVILQMGVMGVFNTNYNSKLFINVEFPAARDFFARVNKLDPVDGQGIMSLVCDQPVSVEEDFLRLSVYKTIAEIKEHNQDAVSVTAGTIKEVEIEFGWWYKGCKKCRRGLREIEKRYFCPNCIRDYEFYEPRYSIHIRVIDHTDATSFVLFDGEAAKFLGVSANDLRQSCVTKGVEKNSCPEEINKLRVIKFIFKVQLKMRNLNSYEPYVIHVLIMINENSLVSAFLDKYNPDPACESKLTPSPAVDEKHNSKILGAKKHIEEVGEESVSSKSKKRKWVVMEN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02701 437 SUPERFAMILY Nucleic acid-binding proteins 222 360 IPR012340 -
Aip03g02701 437 CDD RPA1_DBD_C 225 358 IPR013955 -
Aip03g02701 437 PANTHER REPLICATION FACTOR A 1, RFA1 3 369 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip03g02701 437 Gene3D - 2 66 IPR012340 -
Aip03g02701 437 Gene3D - 217 378 IPR012340 -
Aip03g02701 437 PANTHER BNAC07G49340D PROTEIN 3 369 - -
Aip03g02701 437 SUPERFAMILY Nucleic acid-binding proteins 73 189 IPR012340 -
Aip03g02701 437 SUPERFAMILY Nucleic acid-binding proteins 3 66 IPR012340 -
Aip03g02701 437 Gene3D - 67 194 IPR012340 -
Aip03g02701 437 CDD RPA1_DBD_A_like 4 60 - -
Aip03g02701 437 Pfam Replication factor-A C terminal domain 240 358 IPR013955 -
Aip03g02701 437 Pfam Domain of unknown function DUF223 2 86 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02701 Aip-Chr3 52679359 52682364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02701 4 367 Core DNA Replication Machinery Family AT5G08020 23.421 3.67e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02701 - - adu:107477146 782.326