Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02700 ATGCAGTCAAGTGGCTTCCCTATCTCAAAAAAGCTTGGTGTGATTTGTGCAAATCGTTTCTGCAAGAAGCAAAATGGTCCAACAACAAAGTTGTACCAGGATTCAAGGACCTCCACCGCCGCCGAATGGAGTGACCGATTGCCGCCGTCCGTGGCTGTCCGAGGAGTCTCTCTTTGTACTGTCGGTGTTTTCCAAGTCAAATCTCCTATTCGATGTCTTCTTCCTCACTCGGCGCCCATCCTCCGTCGGATTCTTCCTGCTCGCGGTCGTCTTGTCGCCGTCGTCTCGGCGTCATTGTCTCGAAGTTTAAAGCTTAATATTGTTGTTCTTGGAGAGATGGTGGACCGGATCAAGGATTTTCTGGCATCGGGCGATCAACAACTGCCAATAGTTGTTTTTCAATTTGCAAGAGTAAAAAATGCTGGGAACATTATGTATGGTAATAGACTCTTGATAAATCCGGATATTCCTGAGGCTTTGATGCTTCGAAAAAGCGTGTACTATAGAGAGATCTCGCAGTACCTATCTGTGATTTCTGGCAAACCGGCATATCTTGATGAAGATAAGGTTTTATATTCCACTGGGAGGAAGACAATAAATGAGTTACGTGCGGTTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTCTTTGCAGCGTGAAGGTAGAAGCTAATGCGGATGAATACTTCTGCGACGGCTGTAATAGGGACGTGAATAATGTGGTTGACAGGTATAAGTTGAATTTGTTGATTTTTTATGGTACTGCTACAACAAATTTTGTTGTGTTCGATAAGGAGGTCGTAGCTCTATTCGGACAAACCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGAAAGCAAGCAAAGATCCTATTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTTTATTCAAGGTCGAAGTAGAAACTACTGGATGGTGCGATTCTTATGATGTATCGGTGATACGTTCTGATTCTACAAGTTTACCGAGGTGGAGAGACAATCAAGGCCCGCCTCGAGGTGAAGATGGATGTTCTGTTTGTGATGAGTCACCTGATCCAATCGTAAAAAATCTGTCTGTTACTAAAAAACCTGTTGTCAGGCGCCTGTTGGATGAGTTTAACATGTCTGGTGCTCCTTCCATTAAAAAATAG 1206 0.4345 MQSSGFPISKKLGVICANRFCKKQNGPTTKLYQDSRTSTAAEWSDRLPPSVAVRGVSLCTVGVFQVKSPIRCLLPHSAPILRRILPARGRLVAVVSASLSRSLKLNIVVLGEMVDRIKDFLASGDQQLPIVVFQFARVKNAGNIMYGNRLLINPDIPEALMLRKSVYYREISQYLSVISGKPAYLDEDKVLYSTGRKTINELRAVADVGFYVVRATVLDVEPVPSWWYKSCLCSVKVEANADEYFCDGCNRDVNNVVDRYKLNLLIFYGTATTNFVVFDKEVVALFGQTCTEMVKELNEKGKASKDPIGFNEFFLDKEFLFKVEVETTGWCDSYDVSVIRSDSTSLPRWRDNQGPPRGEDGCSVCDESPDPIVKNLSVTKKPVVRRLLDEFNMSGAPSIKK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02700 401 CDD RPA1_DBD_C 197 340 IPR013955 -
Aip03g02700 401 Pfam Replication factor-A C terminal domain 210 332 IPR013955 -
Aip03g02700 401 SUPERFAMILY Nucleic acid-binding proteins 195 335 IPR012340 -
Aip03g02700 401 Gene3D - 189 346 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02700 Aip-Chr3 52637213 52646247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02700 118 305 Core DNA Replication Machinery Family AT5G61000 23.529 1.07e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02700 - - ahf:112729129 534.258