Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02666 ATGGTGAAGCAGAACAATAACGTGGAGAAGCTTGCGTCAATGGAGCGGAGTGATCTGAAGTACAAAGGTGTAAGGAAGCGAAAGTGGGGGAAGTATGTTTCAGAAATAAGGCTACCAAATAGCCGCCAGAGGATTTGGTTGGGATCCTACGATACCGCCGAGAAGGCGGCGCGTGCATTTGACGCGGCCATGTTTTGCTTACGTGGCGCCGCCGCCAAGTTCAATTTCCCCGGTGCTCCGCCGGAGATCGCCGGCGGCAGGTACATGACCCCTCCCCAAATTCAGGCCGCTGCCGCCCGGTATGCCAATTCTGACCCGGTTCGACCCTGTTCCACCTCGACTGAAACTTCCACGATGTTGTCGGAGGAGACTAAAACGGTGATGCCGGCATCACCATCACCGTCACCGTCCGATGTGACTCTTCAAACGGAATGTGACGTCACAGCCATGAACGGGTCGGGCTCGGATCTTTTTACAACAATAGGGTCGGTTAACCACGATTCTATATTTACGGGTTTTGATGATTTTGGTGGGGATTTCTACCTGCCAGAGATGCCGAGTTACGATTATGAAGAGGAGAATTTGGATGGTTTGATAATTGACGACACTTTCTTGTGGAGTTTCTGA 627 0.5183 MVKQNNNVEKLASMERSDLKYKGVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGAAAKFNFPGAPPEIAGGRYMTPPQIQAAAARYANSDPVRPCSTSTETSTMLSEETKTVMPASPSPSPSDVTLQTECDVTAMNGSGSDLFTTIGSVNHDSIFTGFDDFGGDFYLPEMPSYDYEEENLDGLIIDDTFLWSF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02666 208 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Aip03g02666 208 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Aip03g02666 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 208 - -
Aip03g02666 208 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 208 - -
Aip03g02666 208 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Aip03g02666 208 MobiDBLite consensus disorder prediction 106 138 - -
Aip03g02666 208 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Aip03g02666 208 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Aip03g02666 208 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Aip03g02666 208 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Aip03g02666 208 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Aip03g02666 208 MobiDBLite consensus disorder prediction 101 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02666 Aip-Chr3 50287613 50288701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02666 1 208 AP2-EREBP Transcription Factor Family AT1G74930 45.933 1.45e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g02666 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02666 - - gmx:732656 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02666 03 50287613 50288701 Aip03g02666 03 50287613 50288701 ECH