Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02643 ATGAAAAAGCTCAAATCATTACCGCAGGCCAAGGGAAAAGAAAACTGGAAGCAAGAAAGAAAATCCCGCGAACACTGCAACACACACGAAACCCTGACACAAAAGGTTGGAATTGAAATGCAGAGGAAAGCAGCATTGCCGTTGAGGGACGCAAAAAGCGGCAATGCGAACAAGATGAAGGCTCTGTGCGGCAAGGAAGCTTTGGTGAAGCTTCTGCGATGGCATTTTGGGTACCCTGATTTCAGGGGAAAGCAATTGGACGCTATTCAAGCTGTTCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCTACTGGAGGAGGCAAGTCGATGTGTTATCAGATTCCTGCACTGGCCAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGGCTTTTGCTTATTTGTTCTTTCTGCATGTCAGGAAAACCAAGTAATGGCACTAAAAGAGAAAGGTATTGATGCTGAATTTCTCTCCTCAACAATATCAACTGATGCAAAAAATAAGATTCATGACGATCTTGATTCTGGAAAACCCTCTACAAGGCTACTATATGTGACTCCAGAGTTGATAGCAACAGCGGGGTTTATGCCAAAGCTGAAAAAGATTTACGCTAGGGGGCTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGCCATGATTTCAGACCAAGTTACCGTCAACTTTCATTGTTGAGAAGCCACCTACCAGATGTTCCAATATTAGCTCTAACTGCTACTGCTGCTCCTAAGGTTCAGAAGGATGTTGTACAGTCTTTGCATTTGCAAAATCCATTAATTCTTAAATCTTCTTTTAACCGTCCTAATATCTATTATGAAGTTCGATACAAAGATCTTCTGGATGATGCTTATGCTGATTTATCTAATACATTAAAATCTAAGGGAGATGTTTGTGCAATAGTTTACTGTCTTGAACGTTCAATGTGTGATGAATTGTCAGCTCATCTATCCCAAAATGGCATTTCCTGTGCTGGTAACTCTCTTTCTATGTGTGCATATGTGTGTATATTGCTGTCCTTCAAATTGCATTCATGTTCTTTGCTGTTTGTTTCAGCTTATCATGCAGGATTGAATAAGAAAATGCGAACGTCTGTGTTAGATGAGTGGATTTCTTCCAAAATACAAGTTGTTGTTGCCACTGTTGCTTTTGGGTATGGGATTGATAGAAAGGATGTAAGAATTGTATGCCACTTCAATATTCCCAAGTCAATGGAAGGATTTTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAACTGCCCTGTACAAGTCTGCTGTACTACGGGGTAGATGATCGCAAAAGAATGGAATTCATATTAAGAAATTCAGGAAGCAAGAAATCTCAATCATCTACTTCACAGGAAGAATCATCAAAAAAGTCAATGGCTGACTTTACCCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAAGGATTCTCGAGAGTTTTGGGGAGAAGGTTACTGCATCCCTGTGTGAAAAAACATGTGATGCTTGCAGACATCCAAACTTAGTTGCCCGAAATTTGGAGGATCTGACAACTGCAATTGCTCTGCGCCAGAAAGGCAGTTCTTCTCGAATTTTCATCACCAGTTCTTCTGATGCAATCAACGGAGAACAGTTATCTGAATTCTGGAATCGTGGTGATGAAGCAATTGGCTCAGATGATGATATATCTGACTCCGATGATGGTAATGAGGTTGTCAACAACCTAACCAAGTCAAAGCTTCATTCTAAAGTGGGAGTAAATGAAAAGCTTGCTATGTTAGAACGTGCAGAAGAAAACTTCTATCGAAATGAGAAAGCTAAGAAACAGAGTAAAGTTGACAAGAATGCTATTTCTGATGCAATGCGAGAATCAAGCAGGCAAAGATTACAAAATGCTCTGAAACAGGCTCAGCAGCGACTTGACAACTTAAAGATTGAGTTGGAGACATCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAATATAGCAAAACTGGCAAATCATTCTATTATTCACAAGTGGCGAGCACGGTTAGGTGGCTGGCAACGACAAGTTCCGTTGATATGTTGAACCGACTTGGCGCAATGAAGGAATCTACATCAATGGATGCTGTTCCTGAAGCTGAAGGTCGCACCCCACCACATGCTATAGATCATTCTGGAAAGGAAGGTACAAGTAATGAACTCTCGGGCAATGCTCAGTCAGAAATTTTGCCTTGCGGTGACAGGGGCATGCCAATAGAAAGTTCTTCCGTTAATACAAAGCTGCCACAGATTCCGTCGTTCTATGAATTTGTTAATAGTAGGAAAACAAAAGGTGACCAATTAGATGACACAAAAAAGAACTCATCTAGAGTAGAAAAGAAAATGAGAGTACAGTAG 2412 0.4084 MKKLKSLPQAKGKENWKQERKSREHCNTHETLTQKVGIEMQRKAALPLRDAKSGNANKMKALCGKEALVKLLRWHFGYPDFRGKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIGFCLFVLSACQENQVMALKEKGIDAEFLSSTISTDAKNKIHDDLDSGKPSTRLLYVTPELIATAGFMPKLKKIYARGLLSLIAIDEAHCISSWGHDFRPSYRQLSLLRSHLPDVPILALTATAAPKVQKDVVQSLHLQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSKGDVCAIVYCLERSMCDELSAHLSQNGISCAGNSLSMCAYVCILLSFKLHSCSLLFVSAYHAGLNKKMRTSVLDEWISSKIQVVVATVAFGYGIDRKDVRIVCHFNIPKSMEGFYQESGRAGRDQLPCTSLLYYGVDDRKRMEFILRNSGSKKSQSSTSQEESSKKSMADFTQMVEYCEGSGCRRKRILESFGEKVTASLCEKTCDACRHPNLVARNLEDLTTAIALRQKGSSSRIFITSSSDAINGEQLSEFWNRGDEAIGSDDDISDSDDGNEVVNNLTKSKLHSKVGVNEKLAMLERAEENFYRNEKAKKQSKVDKNAISDAMRESSRQRLQNALKQAQQRLDNLKIELETSASFLEDECYKKYSKTGKSFYYSQVASTVRWLATTSSVDMLNRLGAMKESTSMDAVPEAEGRTPPHAIDHSGKEGTSNELSGNAQSEILPCGDRGMPIESSSVNTKLPQIPSFYEFVNSRKTKGDQLDDTKKNSSRVEKKMRVQ 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02643 803 Coils Coil 636 656 - -
Aip03g02643 803 MobiDBLite consensus disorder prediction 709 763 - -
Aip03g02643 803 CDD DEXHc_RecQ 70 278 - -
Aip03g02643 803 Pfam Helicase conserved C-terminal domain 360 428 IPR001650 -
Aip03g02643 803 SMART helicmild6 348 430 IPR001650 -
Aip03g02643 803 Pfam RecQ zinc-binding 443 514 IPR032284 -
Aip03g02643 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 470 IPR001650 -
Aip03g02643 803 CDD SF2_C_RecQ 279 439 - -
Aip03g02643 803 MobiDBLite consensus disorder prediction 7 28 - -
Aip03g02643 803 MobiDBLite consensus disorder prediction 1 28 - -
Aip03g02643 803 Gene3D - 279 532 IPR027417 -
Aip03g02643 803 Pfam DEAD/DEAH box helicase 85 259 IPR011545 GO:0003676|GO:0005524
Aip03g02643 803 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 45 336 - -
Aip03g02643 803 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 347 787 - -
Aip03g02643 803 MobiDBLite consensus disorder prediction 453 472 - -
Aip03g02643 803 MobiDBLite consensus disorder prediction 777 803 - -
Aip03g02643 803 MobiDBLite consensus disorder prediction 780 803 - -
Aip03g02643 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 271 IPR014001 -
Aip03g02643 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 451 IPR027417 -
Aip03g02643 803 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 71 337 IPR004589 GO:0004386|GO:0006310
Aip03g02643 803 SMART ultradead3 77 287 IPR014001 -
Aip03g02643 803 PANTHER DNA HELICASE RECQ FAMILY MEMBER 45 336 - -
Aip03g02643 803 PANTHER DNA HELICASE RECQ FAMILY MEMBER 347 787 - -
Aip03g02643 803 Gene3D - 42 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02643 Aip-Chr3 49416739 49426593 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02643 74 453 Eukaryotic Initiation Factors Gene Family AT3G19760 21.717 3.23e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02643 - K10901 gmx:100819601 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02643 03 49416739 49426593 Aip03g02643 03 49416739 49426593 ECH