Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02598 ATGGATCACAGAACTCAAGAAGACAAAATCCTCCGAGATTATATCAGTCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCAGAAGACGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCACTTATAGCCGGGAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAGAGTTAGAGATCTTCAAACAATAAGCAGTGCATCTTCTCAGCAACCCAATGAAACAAATAATAACAACAACATTCAGAAACCAACAACAATGCCTCCTTCAACCAATAAAGTGGTCTCCACAACCACTCCCTCTCTGTCACCGTTAAACGATTCACATTCTCTTCTCGTCCGTACAAAAGCTTCTAAGTGCTCTAAGTCATTATTCTTGGATCATTCATCAACAACAACTACTTCACTGCAGCAGAACAAGACTTCTAGTAGTAATAATAATAATAACAATAGCCACGGACTCGATGAAACCGCCGCCGATCATGTTTTGCTGCCACCGCCGGGGTTGTTGCTTCCGAGGAACGGTGACAACAACAACAACAACACCATGGTGATGATGATGATGGAGATGGGTACCAATTCAGAAGAATACAAAGAGATCTCGACAACAGAATTGCTCTTGGATTTTGACGTTGGCGATATTTGCTTGCATTCTCTTCTGAACTCGGATTTCGAGGATATATGCGATTTCGGTTACAACAACAGTAACAGTAACTGCGAGGATCTGTTTGGATTCTCACCGCCGGAGCAGATGCAGCTGGATTCTTCTGATGAAGTTCTAAAGGAAGCCACCGTACCAAGCAACTTCCCTGACGAAACAAATAATATTGTAGAAAACATACAGTTTCTGTGA 984 0.4167 MDHRTQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISEDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKRVRDLQTISSASSQQPNETNNNNNIQKPTTMPPSTNKVVSTTTPSLSPLNDSHSLLVRTKASKCSKSLFLDHSSTTTTSLQQNKTSSSNNNNNNSHGLDETAADHVLLPPPGLLLPRNGDNNNNNTMVMMMMEMGTNSEEYKEISTTELLLDFDVGDICLHSLLNSDFEDICDFGYNNSNSNCEDLFGFSPPEQMQLDSSDEVLKEATVPSNFPDETNNIVENIQFL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02598 327 PANTHER TRANSCRIPTION FACTOR TT2 6 202 - -
Aip03g02598 327 CDD SANT 57 98 IPR001005 -
Aip03g02598 327 Gene3D - 4 52 - -
Aip03g02598 327 MobiDBLite consensus disorder prediction 174 199 - -
Aip03g02598 327 ProSiteProfiles Myb-like domain profile. 6 47 IPR001005 -
Aip03g02598 327 SMART sant 52 100 IPR001005 -
Aip03g02598 327 SMART sant 3 49 IPR001005 -
Aip03g02598 327 MobiDBLite consensus disorder prediction 109 151 - -
Aip03g02598 327 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 202 - -
Aip03g02598 327 Pfam Myb-like DNA-binding domain 53 98 IPR001005 -
Aip03g02598 327 Pfam Myb-like DNA-binding domain 6 47 IPR001005 -
Aip03g02598 327 Gene3D - 57 130 - -
Aip03g02598 327 SUPERFAMILY Homeodomain-like 6 94 IPR009057 -
Aip03g02598 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 102 IPR017930 -
Aip03g02598 327 CDD SANT 6 47 IPR001005 -
Aip03g02598 327 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Aip03g02598 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 47 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02598 Aip-Chr3 47581916 47585090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02598 6 155 MYB Transcription Factor Family AT4G38620 52.288 1.95e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g02598 Myb_DNA-binding 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02598 K09422 - gmx:100802704 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02598 03 47581916 47585090 Aip03g02598 03 47581916 47585090 ECH
Aip03g02598 03 47581916 47585090 Aip01g03405 01 137011795 137013109 PCT