LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g02589	ATGGCGACTCAAATGAGCAAGAAGAGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAGCTGAACGAGGTTTTGACCAGAGAGCTTGCCGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACACCTATGCGCACTGAAATCATCATTAGGGCCACTCGCACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGGGAGCTAACCTCTGTGGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAACTCTATGCTGAGAAGGTTAACAACAGGGGTCTGTGTGCTATTGCCCAAGCAGAATCTCTTCGCTACAAGCTCCTTGGAGGTCTTGCTGTCAGGAGGGCCTGCTATGGTGTTTTGAGGTTCGTAATGGAAAATGGTGCCAAAGGTTGTGAGGTCATTGTTAGTGGGAAATTGAGGGCACAGAGAGCCAAATCCATGAAGTTCAAGGATGGCTACATGATTTCTTCTGGTCAGCCAGTTAAGGATTACATCGACTCTGCTGTTAGACATGTTCTTCTCAGACAGGGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGATTGGGATCCTAAAGGGAAGGTCGGTCCCAAAACTCCCCTCCCTGATATTGTTACTATCCACCCACCGAAAGAGGAAGAAGATTATATCCGGCCGCCTGCTGCAGTTCTGTCAAGTGAAATTGAAGTTCCTGTTCCTGTTGCATGA	717	0.4784	MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMENGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKVGPKTPLPDIVTIHPPKEEEDYIRPPAAVLSSEIEVPVPVA	238

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g02589	238	CDD	40S_S3_KH	15	95	-	-
	Aip03g02589	238	Pfam	KH domain	20	93	IPR004044	GO:0003723
	Aip03g02589	238	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	10	99	IPR009019	GO:0003723
	Aip03g02589	238	TIGRFAM	uS3_euk_arch: ribosomal protein uS3	8	210	IPR005703	GO:0003735\|GO:0006412\|GO:0015935
	Aip03g02589	238	SUPERFAMILY	Ribosomal protein S3 C-terminal domain	93	191	IPR036419	-
	Aip03g02589	238	Pfam	Ribosomal protein S3, C-terminal domain	106	188	IPR001351	GO:0003735\|GO:0006412
	Aip03g02589	238	PANTHER	40S RIBOSOMAL PROTEIN S3-RELATED	3	233	-	-
	Aip03g02589	238	PANTHER	30S/40S RIBOSOMAL PROTEIN S3	3	233	-	-
	Aip03g02589	238	ProSiteProfiles	Type-2 KH domain profile.	21	92	IPR004044	GO:0003723
	Aip03g02589	238	Gene3D	-	1	91	IPR015946	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g02589	Aip-Chr3	46594731	46597437	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g02589	1	234	Cytoplasmic Ribosomal Protein Gene Family	AT5G35530	86.752	2.12e-149	414

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g02589	K02985		-	gmx:100800747	442.965

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